Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p46620 Brassica napus HOM05D003093 ORTHO05D015210 7.1e-131 470.7 253 100.0
BraA06t25990Z Brassica rapa HOM05D003093 ORTHO05D015210 3.0e-129 465.3 253 96.4
C03p14570 Brassica napus HOM05D003093 ORTHO05D015210 2.8e-127 458.8 251 96.0
A06p30680 Brassica napus HOM05D003093 ORTHO05D015210 1.6e-122 443.0 268 90.7
A03p13900 Brassica napus HOM05D003093 ORTHO05D015210 3.8e-116 421.8 253 90.5
A02p10760 Brassica napus HOM05D003093 ORTHO05D015210 1.1e-110 403.7 262 85.1
A09p69230 Brassica napus HOM05D003093 ORTHO05D015210 4.3e-88 328.6 204 86.8
A06p30410 Brassica napus HOM05D003093 ORTHO05D015210 1.6e-74 283.5 144 100.0
BNapus_Darmor_BZH_scaffold_38p00130 Brassica napus HOM05D003093 ORTHO05D015210 1.7e-63 246.9 176 80.7
A03p18440 Brassica napus HOM05D015532 ORTHO05D016079 3.6e-50 202.6 125 87.2
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 5.2e-41 172.2 137 71.5
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 1.5e-40 170.6 137 70.8
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 2.0e-40 170.2 137 70.8
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 2.0e-40 170.2 137 70.8
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 2.0e-40 170.2 137 70.8
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.7e-39 167.2 137 69.3
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 1.7e-39 167.2 176 57.4
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 2.7e-37 159.8 137 65.7
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 3.5e-37 159.5 137 65.7
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 3.5e-37 159.5 137 65.7
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 3.5e-37 159.5 137 67.2
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 6.0e-37 158.7 137 67.2
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 3.9e-36 156.0 137 65.7
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 1.9e-35 153.7 137 64.2
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 4.3e-35 152.5 137 65.0
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 7.3e-35 151.8 137 62.8
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 9.5e-35 151.4 137 65.0
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 1.8e-33 147.1 137 62.0
A06p30420 Brassica napus HOM05D003093 ORTHO05D015210 2.9e-31 139.8 111 76.6
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 7.0e-30 135.2 138 56.5
A03p18450 Brassica napus HOM05D003093 ORTHO05D015210 3.5e-29 132.9 111 71.2
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.0e-28 131.3 140 55.0
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 2.3e-28 130.2 137 53.3
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 3.9e-28 129.4 137 53.3
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 8.6e-28 128.3 161 47.8
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 4.3e-27 125.9 140 52.9
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 4.3e-27 125.9 136 53.7
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 5.6e-27 125.6 157 50.3
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 5.6e-27 125.6 157 50.3
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 1.2e-26 124.4 138 52.2
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 3.6e-26 122.9 140 53.6
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 1.8e-25 120.6 140 50.7
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 6.8e-25 118.6 157 48.4
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 6.8e-25 118.6 157 46.5
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 8.9e-25 118.2 161 47.2
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 8.9e-25 118.2 161 46.0
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.2e-24 117.9 140 52.1
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.5e-24 117.5 157 48.4
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 2.6e-24 116.7 106 61.3
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 2.6e-24 116.7 155 49.0
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 2.6e-24 116.7 161 46.0
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 2.6e-24 116.7 137 51.8
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 2.6e-24 116.7 140 50.7
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 3.4e-24 116.3 161 46.6
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 5.8e-24 115.5 157 47.8
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 5.8e-24 115.5 158 48.1
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 5.8e-24 115.5 140 50.0
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 5.8e-24 115.5 157 46.5
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 5.8e-24 115.5 140 51.4
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 5.8e-24 115.5 140 50.0
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 7.5e-24 115.2 157 48.4
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 9.9e-24 114.8 140 50.7
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.3e-23 114.4 140 51.4
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.3e-23 114.4 140 52.1
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 1.3e-23 114.4 161 45.3
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 1.7e-23 114.0 137 50.4
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 2.2e-23 113.6 137 49.6
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 2.2e-23 113.6 140 50.0
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 2.9e-23 113.2 138 52.2
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 2.9e-23 113.2 140 50.7
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 2.9e-23 113.2 140 50.0
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 3.7e-23 112.8 157 47.1
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 6.4e-23 112.1 137 51.1
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 6.4e-23 112.1 157 46.5
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 8.3e-23 111.7 137 51.1
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 8.3e-23 111.7 140 47.9
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 1.1e-22 111.3 137 49.6
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 1.4e-22 110.9 140 49.3
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.4e-22 110.9 140 50.7
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 1.9e-22 110.5 157 46.5
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 1.9e-22 110.5 157 46.5
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.9e-22 110.5 157 46.5
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.9e-22 110.5 157 46.5
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.9e-22 110.5 157 46.5
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 2.4e-22 110.2 137 49.6
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 2.4e-22 110.2 157 45.2
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 2.4e-22 110.2 140 48.6
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 3.2e-22 109.8 157 46.5
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 3.2e-22 109.8 137 48.2
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 3.2e-22 109.8 140 47.9
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 3.2e-22 109.8 140 47.9
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 3.2e-22 109.8 137 48.9
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 3.2e-22 109.8 137 48.9
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 3.2e-22 109.8 140 49.3
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 4.1e-22 109.4 140 48.6
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 4.1e-22 109.4 137 48.2
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 5.4e-22 109.0 136 50.7
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 5.4e-22 109.0 158 47.5
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 5.4e-22 109.0 137 49.6
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 5.4e-22 109.0 140 47.9
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 5.4e-22 109.0 140 50.7
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 5.4e-22 109.0 137 48.9
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 5.4e-22 109.0 140 48.6
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 5.4e-22 109.0 140 50.0
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 5.4e-22 109.0 137 51.1
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 7.1e-22 108.6 140 49.3
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 7.1e-22 108.6 137 48.9
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 7.1e-22 108.6 137 48.9
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 7.1e-22 108.6 137 48.2
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 9.2e-22 108.2 157 47.1
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 1.2e-21 107.8 137 48.2
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.2e-21 107.8 137 48.2
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.2e-21 107.8 137 48.2
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 1.2e-21 107.8 157 45.2
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.6e-21 107.5 137 48.9
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.6e-21 107.5 140 47.1
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 1.6e-21 107.5 137 48.9
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 2.1e-21 107.1 138 47.8
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 2.7e-21 106.7 140 47.9
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 2.7e-21 106.7 157 45.9
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.7e-21 106.7 137 47.4
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 3.5e-21 106.3 157 45.2
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 3.5e-21 106.3 157 47.1
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 4.6e-21 105.9 137 48.9
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 4.6e-21 105.9 143 47.6
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 6.0e-21 105.5 157 43.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 7.8e-21 105.1 141 48.9
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 7.8e-21 105.1 140 47.1
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.0e-20 104.8 137 48.9
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.3e-20 103.6 138 48.6
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 2.3e-20 103.6 141 48.2
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 2.3e-20 103.6 136 49.3
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 3.9e-20 102.8 141 46.8
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.1e-20 102.4 137 46.0
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 6.6e-20 102.1 137 47.4
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.1e-19 101.3 136 47.8
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 1.9e-19 100.5 137 46.7
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 5.6e-19 99.0 114 53.5
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 9.5e-19 98.2 135 46.7
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 2.8e-18 96.7 137 46.7
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.8e-18 96.7 137 46.7
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.8e-18 96.7 137 46.7
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 3.6e-18 96.3 154 43.5
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 6.2e-18 95.5 140 46.4
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 8.1e-18 95.1 140 45.7
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 8.1e-18 95.1 137 46.0
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 1.1e-17 94.7 67 67.2
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.4e-17 94.4 120 50.8
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 1.4e-17 94.4 136 47.1
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.8e-17 94.0 137 46.0
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.2e-16 91.3 158 39.9
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 1.2e-16 91.3 158 39.9
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 5.8e-16 89.0 140 42.9
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 7.6e-16 88.6 158 39.2
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.3e-15 87.8 141 41.8
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.7e-15 87.4 140 42.1
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 6.4e-15 85.5 141 40.4
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 6.4e-15 85.5 140 42.1
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 8.4e-15 85.1 141 40.4
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 8.4e-15 85.1 141 40.4
Aqoxy2G01568 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 7.1e-14 82.0 108 50.0
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.6e-13 80.9 114 48.2
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 3.0e-12 76.6 126 41.3
BolC8t49598H Brassica oleracea HOM05D015532 ORTHO05D016079 1.5e-11 74.3 43 86.0
Atru.chr12.589 Acer truncatum HOM05D003093 ORTHO05D015210 1.9e-11 73.9 61 62.3
C01p27010 Brassica napus HOM05D015532 ORTHO05D016079 7.3e-11 72.0 43 83.7
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 7.3e-11 72.0 114 42.1
A03p66140 Brassica napus HOM05D015532 ORTHO05D016079 2.8e-10 70.1 53 69.8
BolC1t02649H Brassica oleracea HOM05D015532 ORTHO05D016079 2.8e-10 70.1 38 89.5
BraA03t15666Z Brassica rapa HOM05D015532 ORTHO05D016079 2.8e-10 70.1 53 69.8
BraA09t36838Z Brassica rapa HOM05D015532 ORTHO05D016079 2.8e-10 70.1 53 69.8
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 2.8e-10 70.1 139 39.6
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 8.1e-10 68.6 64 53.1
BcaC09g50283 Brassica carinata HOM05D015532 ORTHO05D016079 3.4e-08 63.2 80 50.0
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 7.6e-08 62.0 148 33.8
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 7.1e-06 55.5 52 63.5


User provided reference genes

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