Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p75670 Brassica napus HOM05D003409 ORTHO05D023923 1.9e-83 312.8 200 100.0
Sp7g24560 Schrenkiella parvula HOM05D003409 ORTHO05D004015 3.7e-42 175.6 216 60.2
C01p22640 Brassica napus HOM05D003409 ORTHO05D004015 3.8e-39 165.6 210 56.7
BolC1t02194H Brassica oleracea HOM05D003409 ORTHO05D004015 4.3e-38 162.2 213 56.8
AL7G26290 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 1.6e-37 160.2 211 59.2
BcaNung02400 Brassica carinata HOM05D003409 ORTHO05D004015 1.6e-37 160.2 220 53.2
BcaC09g50636 Brassica carinata HOM05D003409 ORTHO05D004015 1.4e-36 157.1 211 54.5
Carub.0007s1427 Capsella rubella HOM05D003409 ORTHO05D004015 7.5e-35 151.4 196 61.2
Thhalv10024758m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 9.8e-35 151.0 213 60.1
CARHR234180 Cardamine hirsuta HOM05D003409 ORTHO05D004015 9.2e-33 144.4 116 66.4
A01p17840 Brassica napus HOM05D003409 ORTHO05D004015 9.5e-30 134.4 212 53.8
AT4G26600 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 1.5e-27 127.1 113 62.8
BraA01t01740Z Brassica rapa HOM05D003409 ORTHO05D004015 7.5e-27 124.8 212 52.4
Aa31LG5G11970 Aethionema arabicum HOM05D003409 ORTHO05D004015 2.4e-25 119.8 111 63.1
Nn4g24629 Nelumbo nucifera HOM05D003409 ORTHO05D004015 9.2e-25 117.9 120 56.7
Ciclev10007740m.g Citrus clementina HOM05D003409 ORTHO05D004015 1.6e-24 117.1 122 57.4
Dinv10352 Davidia involucrata HOM05D003409 ORTHO05D004015 1.6e-24 117.1 115 56.5
CiPaw.11G205600 Carya illinoinensis HOM05D003409 ORTHO05D004015 6.0e-24 115.2 183 45.4
HanXRQChr11g0342791 Helianthus annuus HOM05D003409 ORTHO05D004015 7.8e-24 114.8 116 56.0
PGR083G1781 Punica granatum HOM05D003409 ORTHO05D004015 1.0e-23 114.4 118 55.1
Sabra16G0242500 Salix brachista HOM05D003409 ORTHO05D004015 1.3e-23 114.0 118 55.1
Manes.11G044000 Manihot esculenta HOM05D003409 ORTHO05D004015 3.9e-23 112.5 122 52.5
Eucgr.C03787 Eucalyptus grandis HOM05D003409 ORTHO05D004015 1.1e-22 110.9 122 54.9
Lj1A892G90 Lonicera japonica HOM05D003409 ORTHO05D004015 1.1e-22 110.9 116 52.6
Lsat_1_v5_gn_2_49000 Lactuca sativa HOM05D003409 ORTHO05D004015 1.5e-22 110.5 120 58.3
CANSAT11G2129 Cannabis sativa HOM05D003409 ORTHO05D004015 1.9e-22 110.2 119 53.8
QL08p003492 Quercus lobata HOM05D003409 ORTHO05D004015 2.5e-22 109.8 118 55.1
Hma1.2p1_1804F.1_g303050 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 3.3e-22 109.4 115 53.9
Hma1.2p1_1804F.1_g303060 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 3.3e-22 109.4 115 53.9
Cfa016917 Carpinus fangiana HOM05D003409 ORTHO05D004015 4.3e-22 109.0 153 45.8
unitig_578.g16234 Utricularia gibba HOM05D003409 ORTHO05D004015 5.6e-22 108.6 120 55.8
CDE07G1104 Ceratophyllum demersum HOM05D003409 ORTHO05D004015 9.5e-22 107.8 120 54.2
ECA248G0890 Erigeron canadensis HOM05D003409 ORTHO05D004015 9.5e-22 107.8 79 67.1
Lj6g0020357 Lotus japonicus HOM05D003409 ORTHO05D004015 1.6e-21 107.1 118 55.9
Potri.001G369600 Populus trichocarpa HOM05D003409 ORTHO05D004015 2.1e-21 106.7 120 54.2
Glyma.18G075000 Glycine max HOM05D003409 ORTHO05D004015 2.8e-21 106.3 125 53.6
MD04G1044800 Malus domestica HOM05D003409 ORTHO05D004015 6.2e-21 105.1 118 54.2
TAR383G0304 Trochodendron aralioides HOM05D003409 ORTHO05D004015 8.1e-21 104.8 81 65.4
Eucgr.F02036 Eucalyptus grandis HOM05D003409 ORTHO05D004015 1.1e-20 104.4 120 53.3
Gohir.D13G135000 Gossypium hirsutum HOM05D003409 ORTHO05D004015 1.4e-20 104.0 121 52.1
COL.COLO4_07725 Corchorus olitorius HOM05D003409 ORTHO05D004015 1.8e-20 103.6 81 65.4
HPP92_010888 Vanilla planifolia HOM05D003409 ORTHO05D004015 1.8e-20 103.6 118 50.8
HPP92_010890 Vanilla planifolia HOM05D003409 ORTHO05D004015 1.8e-20 103.6 118 50.8
Zm00001eb253180 Zea mays HOM05D003409 ORTHO05D004015 1.8e-20 103.6 118 51.7
Rhsim10G0056000 Rhododendron simsii HOM05D003409 ORTHO05D004015 4.0e-20 102.4 135 47.4
Migut.H01746 Erythranthe guttata HOM05D003409 ORTHO05D004015 5.2e-20 102.1 179 41.9
Solyc07g052110.4 Solanum lycopersicum HOM05D003409 ORTHO05D004015 1.2e-19 100.9 81 64.2
Nitab4.5_0002789g0050 Nicotiana tabacum HOM05D003409 ORTHO05D004015 1.5e-19 100.5 116 54.3
THA.LOC104817712 Tarenaya hassleriana HOM05D003409 ORTHO05D004015 2.0e-19 100.1 200 40.5
Sopen07g025740 Solanum pennellii HOM05D003409 ORTHO05D004015 3.4e-19 99.4 81 63.0
TWI38G2383 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 3.4e-19 99.4 115 51.3
TWI39G0812 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 4.4e-19 99.0 116 50.9
BraA10t43407Z Brassica rapa HOM05D003409 ORTHO05D004015 7.5e-19 98.2 117 55.6
Lsat_1_v5_gn_1_7960 Lactuca sativa HOM05D003409 ORTHO05D004015 9.9e-19 97.8 81 61.7
GSVIVG01014717001 Vitis vinifera HOM05D003409 ORTHO05D004015 9.9e-19 97.8 120 52.5
BcaB08g35958 Brassica carinata HOM05D003409 ORTHO05D004015 1.7e-18 97.1 120 51.7
BcaC04g20188 Brassica carinata HOM05D003409 ORTHO05D004015 2.2e-18 96.7 117 54.7
C09p46870 Brassica napus HOM05D003409 ORTHO05D004015 2.2e-18 96.7 117 54.7
BolC9t57537H Brassica oleracea HOM05D003409 ORTHO05D004015 2.2e-18 96.7 117 54.7
Zm00001eb189070 Zea mays HOM05D003409 ORTHO05D004015 6.4e-18 95.1 113 49.6
A10p13110 Brassica napus HOM05D003409 ORTHO05D004015 8.3e-18 94.7 117 54.7
Os02g0724600 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 1.9e-17 93.6 115 50.4
CSS0010821 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 3.2e-17 92.8 116 55.2
arahy.Tifrunner.gnm1.ann1.K9VFVK Arachis hypogaea HOM05D003409 ORTHO05D004015 4.1e-17 92.4 116 47.4
arahy.Tifrunner.gnm1.ann1.PKXG4Q Arachis hypogaea HOM05D003409 ORTHO05D004015 5.4e-17 92.0 116 47.4
FAN07G2833 Fragaria x ananassa HOM05D003409 ORTHO05D004015 5.4e-17 92.0 82 57.3
FAN12G1033 Fragaria x ananassa HOM05D003409 ORTHO05D004015 5.4e-17 92.0 82 57.3
SGA_v2.0_scaffold42G15966 Striga asiatica HOM05D003409 ORTHO05D004015 5.4e-17 92.0 123 46.3
Sed0016663 Sechium edule HOM05D003409 ORTHO05D004015 7.1e-17 91.7 116 51.7
Atru.chr2.3736 Acer truncatum HOM05D003409 ORTHO05D004015 9.2e-17 91.3 202 38.1
FAN17G0359 Fragaria x ananassa HOM05D003409 ORTHO05D004015 9.2e-17 91.3 82 56.1
Actinidia35412 Actinidia chinensis HOM05D003409 ORTHO05D004015 1.6e-16 90.5 81 58.0
EL10Ac4g07529 Beta vulgaris HOM05D003409 ORTHO05D004015 1.6e-16 90.5 136 47.1
ATR0751G119 Amborella trichopoda HOM05D003409 ORTHO05D004015 2.1e-16 90.1 116 45.7
Thhalv10012859m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 2.1e-16 90.1 120 51.7
SGA_v2.0_scaffold1G00379 Striga asiatica HOM05D003409 ORTHO05D004015 2.1e-16 90.1 121 47.9
C05p21660 Brassica napus HOM05D023816 ORTHO05D023923 2.7e-16 89.7 119 49.6
BolC5t30861H Brassica oleracea HOM05D023816 ORTHO05D023923 2.7e-16 89.7 119 49.6
FAN17G1343 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.7e-16 89.7 111 51.4
RcHm_v2.0_Chr4g0408681 Rosa chinensis HOM05D003409 ORTHO05D004015 2.7e-16 89.7 81 55.6
SalBow5G1153 Salvia bowleyana HOM05D003409 ORTHO05D004015 2.7e-16 89.7 81 56.8
Os09g0551300 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 3.5e-16 89.4 118 50.8
MELO3C024955.2 Cucumis melo HOM05D003409 ORTHO05D004015 4.6e-16 89.0 116 50.9
FvH4_4g11570 Fragaria vesca HOM05D003409 ORTHO05D004015 4.6e-16 89.0 80 56.2
FAN12G3679 Fragaria x ananassa HOM05D003409 ORTHO05D004015 4.6e-16 89.0 80 56.2
Rhsim06G0084600 Rhododendron simsii HOM05D003409 ORTHO05D004015 4.6e-16 89.0 135 48.1
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 6.0e-16 88.6 82 57.3
Gohir.A13G131500 Gossypium hirsutum HOM05D003409 ORTHO05D004015 6.0e-16 88.6 121 48.8
Solyc02g079415.1 Solanum lycopersicum HOM05D003409 ORTHO05D004015 6.0e-16 88.6 119 50.4
Sopen02g024220 Solanum pennellii HOM05D003409 ORTHO05D004015 6.0e-16 88.6 119 50.4
Atru.chr2.3741 Acer truncatum HOM05D003409 ORTHO05D004015 1.0e-15 87.8 203 39.4
AUR62017142 Chenopodium quinoa HOM05D003409 ORTHO05D004015 1.0e-15 87.8 125 46.4
AT5G55920 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 1.3e-15 87.4 209 39.7
BolC2t07681H Brassica oleracea HOM05D003409 ORTHO05D004015 1.3e-15 87.4 215 45.1
CsaV3_7G011550 Cucumis sativus L. HOM05D003409 ORTHO05D004015 1.3e-15 87.4 116 50.9
FAN04G1394 Fragaria x ananassa HOM05D003409 ORTHO05D004015 1.3e-15 87.4 80 55.0
PGSC0003DMG400022346 Solanum tuberosum HOM05D003409 ORTHO05D004015 1.7e-15 87.0 119 49.6
AagrBONN_evm.TU.Sc2ySwM_117.3404 Anthoceros agrestis HOM05D003409 ORTHO05D004015 2.3e-15 86.7 81 53.1
AUR62035665 Chenopodium quinoa HOM05D003409 ORTHO05D004015 2.3e-15 86.7 123 43.1
Mapoly0034s0108 Marchantia polymorpha HOM05D003409 ORTHO05D004015 3.9e-15 85.9 108 46.3
Duzib213G0349 Durio zibethinus HOM05D003409 ORTHO05D004015 5.1e-15 85.5 63 65.1
Peaxi162Scf00057g02234 Petunia axillaris HOM05D003409 ORTHO05D004015 6.6e-15 85.1 82 58.5
vmacro11609 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 8.6e-15 84.7 118 46.6
Prupe.8G036800 Prunus persica HOM05D003409 ORTHO05D004015 1.1e-14 84.3 120 50.0
Sp6g17770 Schrenkiella parvula HOM05D003409 ORTHO05D004015 1.1e-14 84.3 186 37.1
Medtr3g460700 Medicago truncatula HOM05D003409 ORTHO05D004015 2.5e-14 83.2 191 37.7
Pp3c1_15210 Physcomitrium patens HOM05D003409 ORTHO05D004015 2.5e-14 83.2 82 48.8
Thecc.07G009800 Theobroma cacao HOM05D003409 ORTHO05D004015 4.3e-14 82.4 59 67.8
Carub.0008s1625 Capsella rubella HOM05D003409 ORTHO05D004015 5.6e-14 82.0 233 40.3
SMO367G0604 Selaginella moellendorffii HOM05D003409 ORTHO05D004015 9.5e-14 81.3 84 51.2
vmacro15782 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 1.6e-13 80.5 85 54.1
DCAR_017070 Daucus carota HOM05D003409 ORTHO05D004015 2.1e-13 80.1 63 63.5
Cc04_g00350 Coffea canephora HOM05D003409 ORTHO05D004015 2.8e-13 79.7 57 68.4
Hund01871 Selenicereus undatus HOM05D003409 ORTHO05D004015 2.8e-13 79.7 60 63.3
ClCG09G021450 Citrullus lanatus HOM05D003409 ORTHO05D004015 3.6e-13 79.3 81 53.1
Gohir.A01G093200 Gossypium hirsutum HOM05D003409 ORTHO05D004015 4.7e-13 79.0 120 47.5
BcaC07g39178 Brassica carinata HOM05D003409 ORTHO05D004015 6.2e-13 78.6 95 48.4
Cpa.g.sc12.127 Carica papaya HOM05D003409 ORTHO05D004015 6.2e-13 78.6 195 35.4
C02p15590 Brassica napus HOM05D003409 ORTHO05D004015 1.1e-12 77.8 84 53.6
Lalb_Chr15g0082251 Lupinus albus HOM05D003409 ORTHO05D004015 1.8e-12 77.0 60 61.7
Lalb_Chr20g0114091 Lupinus albus HOM05D003409 ORTHO05D004015 1.8e-12 77.0 117 47.0
Hund01870 Selenicereus undatus HOM05D003409 ORTHO05D004015 1.8e-12 77.0 60 61.7
Aqoxy1G01862 Aquilegia oxysepala HOM05D003409 ORTHO05D004015 2.4e-12 76.6 82 52.4
BcaB05g22238 Brassica carinata HOM05D003409 ORTHO05D004015 2.4e-12 76.6 226 38.1
Oeu005478.2 Olea europaea HOM05D003409 ORTHO05D004015 2.4e-12 76.6 122 45.9
Oeu039418.1 Olea europaea HOM05D003409 ORTHO05D004015 2.4e-12 76.6 196 37.2
Psat5g165320 Pisum sativum HOM05D003409 ORTHO05D004015 2.4e-12 76.6 62 62.9
VMungo0540G1920 Vigna mungo HOM05D003409 ORTHO05D004015 2.4e-12 76.6 117 47.0
PSO210G5345 Papaver somniferum HOM05D003409 ORTHO05D004015 3.1e-12 76.3 82 56.1
Ah.01g014980 Amaranthus hybridus HOM05D003409 ORTHO05D004015 4.0e-12 75.9 83 50.6
BcaC07g37821 Brassica carinata HOM05D003409 ORTHO05D004015 5.2e-12 75.5 95 47.4
Gorai.013G151300 Gossypium raimondii HOM05D003409 ORTHO05D004015 5.2e-12 75.5 125 44.8
MBI14_g18948_MAGBIO Magnolia biondii HOM05D003409 ORTHO05D004015 6.8e-12 75.1 189 36.5
BcaC03g15509 Brassica carinata HOM05D003409 ORTHO05D004015 8.9e-12 74.7 95 48.4
A02p09450 Brassica napus HOM05D003409 ORTHO05D004015 8.9e-12 74.7 56 66.1
BraA02t06009Z Brassica rapa HOM05D003409 ORTHO05D004015 8.9e-12 74.7 56 66.1
Nitab4.5_0000160g0180 Nicotiana tabacum HOM05D003409 ORTHO05D004015 1.5e-11 73.9 68 58.8
PSO210G2179 Papaver somniferum HOM05D003409 ORTHO05D004015 2.0e-11 73.6 83 54.2
Glyma.08G332000 Glycine max HOM05D003409 ORTHO05D004015 2.6e-11 73.2 121 43.8
Gohir.D01G077700 Gossypium hirsutum HOM05D003409 ORTHO05D004015 3.4e-11 72.8 117 46.2
CARHR269290 Cardamine hirsuta HOM05D003409 ORTHO05D004015 5.8e-11 72.0 121 47.1
AL8G31480 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 7.6e-11 71.6 217 47.5
A02p19390 Brassica napus HOM05D003409 ORTHO05D004015 7.6e-11 71.6 95 47.4
C02p15740 Brassica napus HOM05D003409 ORTHO05D004015 7.6e-11 71.6 124 46.0
Sc03g0011610 Simmondsia chinensis HOM05D003409 ORTHO05D004015 7.6e-11 71.6 123 46.3
CAN.G424.40 Capsicum annuum HOM05D003409 ORTHO05D004015 9.9e-11 71.2 183 38.3
BolC2t10305H Brassica oleracea HOM05D003409 ORTHO05D004015 2.9e-10 69.7 87 47.1
TPR.G17957 Trifolium pratense HOM05D003409 ORTHO05D004015 2.9e-10 69.7 124 44.4
BcaB08g35371 Brassica carinata HOM05D003409 ORTHO05D004015 8.4e-10 68.2 94 48.9
Aa31LG3G11830 Aethionema arabicum HOM05D003409 ORTHO05D004015 1.1e-09 67.8 288 33.7
PSO478G4279 Papaver somniferum HOM05D003409 ORTHO05D004015 1.1e-09 67.8 53 67.9
Gorai.002G102200 Gossypium raimondii HOM05D003409 ORTHO05D004015 1.4e-09 67.4 193 45.1
CBR_g8798 Chara braunii HOM05D003409 ORTHO05D004015 7.1e-09 65.1 81 39.5
Phvul.006G059200 Phaseolus vulgaris HOM05D003409 ORTHO05D004015 7.1e-09 65.1 117 41.9
A09p23650 Brassica napus HOM05D003409 ORTHO05D004015 9.2e-09 64.7 95 42.1
SEGI_08867 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 2.1e-08 63.5 190 33.7
C08p21680 Brassica napus HOM05D003409 ORTHO05D004015 3.5e-08 62.8 87 44.8
Haze_09846 Corylus avellana HOM05D003409 ORTHO05D004015 2.3e-07 60.1 116 37.9
CANSAT56G4380 Cannabis sativa HOM05D003502 ORTHO05D004250 3.0e-07 59.7 41 68.3
Eucgr.L03517 Eucalyptus grandis HOM05D003409 ORTHO05D004015 8.7e-07 58.2 86 48.8
Dinv40878 Davidia involucrata HOM05D003409 ORTHO05D004015 1.9e-06 57.0 142 34.5
SEGI_06120 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 3.3e-06 56.2 50 52.0


User provided reference genes

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