Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 7.3e-192 674.5 574 100.0
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 1.9e-184 649.8 574 86.2
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 9.0e-166 587.8 552 78.4
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 9.0e-166 587.8 552 78.4
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 7.9e-162 574.7 574 93.2
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 9.4e-147 524.6 575 86.6
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 1.5e-141 507.3 574 86.9
BcaC01g06672 Brassica carinata HOM05D003327 ORTHO05D004535 5.4e-110 402.5 204 96.1
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 4.9e-79 299.7 474 66.5
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 1.4e-78 298.1 471 81.3
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 2.7e-77 293.9 471 79.8
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 2.3e-76 290.8 471 80.3
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 1.2e-74 285.0 469 79.5
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 4.7e-74 283.1 465 80.0
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 6.2e-74 282.7 469 77.8
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 1.1e-73 282.0 468 79.5
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 1.4e-73 281.6 468 79.3
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 1.4e-73 281.6 468 79.3
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 6.9e-73 279.3 470 80.0
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 9.0e-73 278.9 464 80.0
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 9.0e-73 278.9 464 80.0
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 9.0e-73 278.9 471 78.6
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 1.2e-72 278.5 474 78.3
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 4.4e-72 276.6 469 80.4
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 4.4e-72 276.6 469 80.2
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.3e-71 275.0 469 80.0
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 3.8e-71 273.5 469 79.7
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 4.9e-71 273.1 469 80.0
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 8.4e-71 272.3 468 79.7
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 1.9e-70 271.2 470 80.2
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 2.4e-70 270.8 469 79.7
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 4.2e-70 270.0 469 79.5
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 1.2e-69 268.5 468 76.9
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.6e-69 268.1 473 70.0
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 4.6e-69 266.5 469 75.5
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 7.8e-69 265.8 468 76.9
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 1.0e-68 265.4 467 79.2
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.0e-68 265.4 476 59.0
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 1.7e-68 264.6 469 78.0
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 2.3e-68 264.2 483 68.7
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 3.9e-68 263.5 469 75.5
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 5.1e-68 263.1 469 74.8
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 8.7e-68 262.3 469 78.3
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 8.7e-68 262.3 483 65.0
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 1.1e-67 261.9 469 78.7
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.1e-67 261.9 469 77.6
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 1.5e-67 261.5 471 75.6
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 1.5e-67 261.5 469 75.7
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 1.5e-67 261.5 469 76.1
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 1.5e-67 261.5 467 77.3
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 1.9e-67 261.2 471 76.2
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 2.5e-67 260.8 484 66.9
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 3.3e-67 260.4 469 77.2
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 3.3e-67 260.4 469 78.3
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 4.3e-67 260.0 474 76.8
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 1.3e-66 258.5 483 56.7
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 2.1e-66 257.7 469 78.5
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 2.1e-66 257.7 483 66.9
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 2.8e-66 257.3 485 61.2
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 2.8e-66 257.3 469 74.4
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 3.6e-66 256.9 469 76.3
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 4.8e-66 256.5 469 75.5
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 4.8e-66 256.5 469 75.5
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 6.2e-66 256.1 469 75.5
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 6.2e-66 256.1 469 75.5
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 8.1e-66 255.8 469 78.0
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 1.1e-65 255.4 469 77.4
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 1.8e-65 254.6 483 66.0
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.4e-65 254.2 469 76.1
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 4.0e-65 253.4 467 74.7
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 6.9e-65 252.7 467 73.7
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 9.0e-65 252.3 469 74.6
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 1.5e-64 251.5 469 77.4
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 2.6e-64 250.8 467 75.8
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 3.4e-64 250.4 483 59.8
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 3.4e-64 250.4 483 64.2
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.4e-64 250.4 467 75.4
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 9.9e-64 248.8 469 77.4
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 2.2e-63 247.7 466 72.7
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 2.2e-63 247.7 464 74.6
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 3.8e-63 246.9 469 73.1
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 8.4e-63 245.7 467 74.7
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 5.4e-62 243.0 470 73.0
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 5.4e-62 243.0 469 74.0
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 1.2e-61 241.9 467 58.2
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 1.2e-61 241.9 470 72.8
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 1.2e-61 241.9 463 74.1
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.1e-61 241.1 470 74.9
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 4.6e-61 240.0 467 71.7
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.0e-60 238.8 468 72.4
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 1.8e-60 238.0 466 73.6
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 3.0e-60 237.3 469 76.5
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.5e-59 235.0 465 72.7
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 1.9e-59 234.6 467 75.8
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.5e-59 234.2 463 48.8
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 3.3e-59 233.8 469 76.5
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 4.3e-59 233.4 470 70.4
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 7.4e-59 232.6 469 76.3
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 7.4e-59 232.6 469 50.7
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 6.2e-58 229.6 460 73.5
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 6.2e-58 229.6 470 75.1
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.1e-57 228.8 468 59.6
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 1.8e-57 228.0 467 75.6
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 2.4e-57 227.6 478 54.4
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 5.3e-57 226.5 467 75.8
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 9.0e-57 225.7 491 59.5
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 1.2e-56 225.3 469 75.9
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.8e-56 223.0 457 72.4
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 5.8e-56 223.0 469 75.3
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 9.9e-56 222.2 469 67.6
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 1.7e-55 221.5 467 73.4
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 2.9e-55 220.7 467 75.4
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 4.9e-55 219.9 467 71.7
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.9e-54 218.0 467 71.5
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 2.4e-54 217.6 469 71.6
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.2e-53 215.3 468 63.5
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 6.0e-53 213.0 469 63.8
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 1.8e-52 211.5 470 60.9
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 5.1e-52 209.9 467 74.3
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 5.6e-51 206.5 470 60.2
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 3.7e-50 203.8 469 56.5
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 6.2e-50 203.0 104 95.2
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 4.0e-49 200.3 461 60.3
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 6.9e-49 199.5 461 60.3
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 9.0e-49 199.1 289 65.1
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 1.2e-48 198.7 437 60.0
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 1.5e-48 198.4 472 52.3
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 1.0e-47 195.7 278 80.9
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 2.9e-47 194.1 276 81.2
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 2.7e-45 187.6 455 51.0
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 1.9e-43 181.4 469 48.2
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 4.8e-42 176.8 117 73.5
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 8.2e-42 176.0 124 68.5
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.1e-41 173.7 468 37.8
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 5.9e-40 169.9 122 68.0
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 7.6e-40 169.5 339 53.1
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 2.2e-39 167.9 277 74.4
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 8.5e-39 166.0 282 75.2
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 1.1e-38 165.6 276 75.7
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 7.2e-38 162.9 122 63.1
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 1.1e-35 155.6 449 53.0
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.9e-35 154.8 485 60.0
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 9.7e-35 152.5 114 67.5
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 2.8e-34 151.0 118 61.9
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 4.8e-34 150.2 120 60.8
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 6.9e-33 146.4 111 65.8
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 2.6e-32 144.4 99 70.7
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 3.8e-31 140.6 103 66.0
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 8.5e-31 139.4 114 62.3
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 1.1e-30 139.0 79 86.1
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 2.6e-27 127.9 122 49.2
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 1.7e-26 125.2 477 44.4
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 4.1e-25 120.6 236 65.3
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 6.5e-23 113.2 112 53.6
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 2.5e-22 111.3 92 58.7
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 1.2e-21 109.0 468 33.5
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 3.0e-20 104.4 101 58.4
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 5.2e-20 103.6 240 31.7
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 6.3e-18 96.7 88 51.1
Lalb_Chr24g0399861 Lupinus albus HOM05D003327 ORTHO05D004535 5.9e-16 90.1 101 49.5
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 1.5e-14 85.5 101 46.5
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 1.2e-13 82.4 69 55.1
Nn2g15287 Nelumbo nucifera HOM05D003327 ORTHO05D004535 8.0e-13 79.7 46 82.6
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 1.2e-08 65.9 96 43.8
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 1.2e-08 65.9 195 27.7
Ciclev10027259m.g Citrus clementina HOM05D003327 ORTHO05D024129 4.5e-08 63.9 45 71.1


User provided reference genes

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