Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p17000 Brassica napus HOM05D001573 ORTHO05D098306 2.1e-100 369.0 183 100.0
C05p38540 Brassica napus HOM05D001573 ORTHO05D021995 3.2e-24 115.9 56 96.4
BolC5t32589H Brassica oleracea HOM05D001573 ORTHO05D021995 3.2e-24 115.9 56 96.4
C02p57940 Brassica napus HOM05D001573 ORTHO05D021995 7.1e-24 114.8 56 96.4
C08p28410 Brassica napus HOM05D001573 ORTHO05D021995 2.3e-22 109.8 56 92.9
A04p08830 Brassica napus HOM05D001573 ORTHO05D021995 3.0e-22 109.4 73 80.8
BraA04t16577Z Brassica rapa HOM05D001573 ORTHO05D021995 6.7e-14 81.6 47 85.1
FAN02G0588 Fragaria x ananassa HOM05D001573 ORTHO05D001660 3.6e-07 59.3 43 65.1
FAN09G0619 Fragaria x ananassa HOM05D001573 ORTHO05D001660 3.6e-07 59.3 43 65.1
FAN14G4826 Fragaria x ananassa HOM05D001573 ORTHO05D001660 3.6e-07 59.3 43 65.1
Atru.chr1.1139 Acer truncatum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Actinidia39209 Actinidia chinensis HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Aa31LG1G21140 Aethionema arabicum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 1.0e-06 57.8 40 70.0
AL3G21660 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
AT3G10330 Arabidopsis thaliana HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
arahy.Tifrunner.gnm1.ann1.H5KDYL Arachis hypogaea HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
arahy.Tifrunner.gnm1.ann1.TYVF6X Arachis hypogaea HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
MSTRG.6415 Avicennia marina HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
A03p36480 Brassica napus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
CANSAT80G1061 Cannabis sativa HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
CANSAT80G1703 Cannabis sativa HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Carub.0003s0951 Capsella rubella HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Carub.0006s0317 Capsella rubella HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
CAN.G641.23 Capsicum annuum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
CARHR084810 Cardamine hirsuta HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Cpa.g.sc182.4 Carica papaya HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Cfa016793 Carpinus fangiana HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
CiPaw.10G034500 Carya illinoinensis HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Ca_27319_v3 Cicer arietinum L. HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
ClCG04G003560 Citrullus lanatus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Ciclev10005479m.g Citrus clementina HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Cc06_g17760 Coffea canephora HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
COL.COLO4_05420 Corchorus olitorius HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Haze_19819 Corylus avellana HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Haze_19822 Corylus avellana HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
MELO3C019179.2 Cucumis melo HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
CsaV3_4G028940 Cucumis sativus L. HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
DCAR_003263 Daucus carota HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Dinv12405 Davidia involucrata HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Dinv39630 Davidia involucrata HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Duzib093G2008 Durio zibethinus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Duzib106G0070 Durio zibethinus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Duzib128G1003 Durio zibethinus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
FvH4_6g24330 Fragaria vesca HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
FAN05G4302 Fragaria x ananassa HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Glyma.02G185900 Glycine max HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Glyma.03G134600 Glycine max HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Glyma.10G108600 Glycine max HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Glyma.19G136800 Glycine max HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Gohir.A01G130800 Gossypium hirsutum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Gohir.A09G121600 Gossypium hirsutum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Gohir.D01G119900 Gossypium hirsutum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Gohir.D09G117700 Gossypium hirsutum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Gorai.002G146300 Gossypium raimondii HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Gorai.006G136100 Gossypium raimondii HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Hma1.2p1_1279F.1_g272470 Hydrangea macrophylla HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Lsat_1_v5_gn_8_81600 Lactuca sativa HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Lsat_1_v5_gn_9_30840 Lactuca sativa HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Lj2A386G76 Lonicera japonica HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Lju124C45T17 Lonicera japonica HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Lj1g0002598 Lotus japonicus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Lj5g0004050 Lotus japonicus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Lalb_Chr06g0173461 Lupinus albus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Lalb_Chr21g0316531 Lupinus albus HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
MD12G1075300 Malus domestica HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
MD14G1073800 Malus domestica HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Manes.08G052800 Manihot esculenta HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Manes.09G018200 Manihot esculenta HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Medtr3g040150 Medicago truncatula HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Medtr7g091230 Medicago truncatula HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Nitab4.5_0000082g0190 Nicotiana tabacum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Nitab4.5_0001598g0010 Nicotiana tabacum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Oeu008169.1 Olea europaea HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Peaxi162Scf00002g02826 Petunia axillaris HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Phvul.001G130000 Phaseolus vulgaris HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Phvul.007G251400 Phaseolus vulgaris HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Potri.006G048400 Populus trichocarpa HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Potri.016G057100 Populus trichocarpa HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Prupe.7G055400 Prunus persica HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
PGR004G1049 Punica granatum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Rhsim04G0103300 Rhododendron simsii HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
RcHm_v2.0_Chr3g0483261 Rosa chinensis HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Sabra06G0033700 Salix brachista HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Sabra16G0060000 Salix brachista HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Sabra16G0060100 Salix brachista HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Sp3g08600 Schrenkiella parvula HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Sp6g38540 Schrenkiella parvula HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Sed0001895 Sechium edule HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Sc19g0006610 Simmondsia chinensis HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Solyc10g079360.3 Solanum lycopersicum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Sopen10g030000 Solanum pennellii HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
PGSC0003DMG401008136 Solanum tuberosum HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
THA.LOC104826895 Tarenaya hassleriana HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Thecc.05G150600 Theobroma cacao HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
TPR.G18260 Trifolium pratense HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
TPR.G19655 Trifolium pratense HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
TWI53G1442 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
TWI77G0498 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
vmacro09069 Vaccinium macrocarpon HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
VMungo0720G0356 Vigna mungo HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
VMungo1383G1281 Vigna mungo HOM05D001573 ORTHO05D001660 1.0e-06 57.8 40 67.5
Carub.0004s2388 Capsella rubella HOM05D001573 ORTHO05D001660 1.4e-06 57.4 40 70.0
CARHR136720 Cardamine hirsuta HOM05D001573 ORTHO05D001660 1.4e-06 57.4 40 70.0
GSVIVG01029415001 Vitis vinifera HOM05D001573 ORTHO05D001660 1.4e-06 57.4 40 67.5
GSVIVG01033246001 Vitis vinifera HOM05D001573 ORTHO05D001660 1.4e-06 57.4 40 67.5
Actinidia27636 Actinidia chinensis HOM05D001573 ORTHO05D001660 1.8e-06 57.0 50 58.0
Aqoxy2G00206 Aquilegia oxysepala HOM05D001573 ORTHO05D001660 1.8e-06 57.0 40 67.5
Nn2g15172 Nelumbo nucifera HOM05D001573 ORTHO05D001660 1.8e-06 57.0 40 67.5
PSO541G1513 Papaver somniferum HOM05D001573 ORTHO05D001660 1.8e-06 57.0 40 67.5
PSO541G6367 Papaver somniferum HOM05D001573 ORTHO05D001660 1.8e-06 57.0 40 67.5
PSO675G1154 Papaver somniferum HOM05D001573 ORTHO05D001660 1.8e-06 57.0 40 67.5
PSO675G8674 Papaver somniferum HOM05D001573 ORTHO05D001660 1.8e-06 57.0 40 67.5
TAR633G0206 Trochodendron aralioides HOM05D001573 ORTHO05D001660 1.8e-06 57.0 40 67.5
TAR636G3057 Trochodendron aralioides HOM05D001573 ORTHO05D001660 1.8e-06 57.0 40 67.5
AT2G41630 Arabidopsis thaliana HOM05D001573 ORTHO05D001660 2.3e-06 56.6 40 67.5
Thhalv10021335m.g Eutrema salsugineum HOM05D001573 ORTHO05D001660 2.3e-06 56.6 39 69.2
Medtr3g037190 Medicago truncatula HOM05D001573 ORTHO05D001660 2.3e-06 56.6 40 65.0
unitig_8.g3501 Utricularia gibba HOM05D001573 ORTHO05D001660 2.3e-06 56.6 40 65.0
BcaB01g03461 Brassica carinata HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
BcaC01g05328 Brassica carinata HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
BcaNung04066 Brassica carinata HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
A03p23330 Brassica napus HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
A05p02370 Brassica napus HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
C03p27860 Brassica napus HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
C04p02810 Brassica napus HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
BolC4t21921H Brassica oleracea HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
BraA03t11551Z Brassica rapa HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
BraA05t19231Z Brassica rapa HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
CSS0032923 Camellia sinensis var. sinensis HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
CiPaw.09G039600 Carya illinoinensis HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
Ca_08438_v3 Cicer arietinum L. HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
ECA236G3885 Erigeron canadensis HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
ECA248G0012 Erigeron canadensis HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
Migut.J01739 Erythranthe guttata HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
Eucgr.A02331 Eucalyptus grandis HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
HanXRQChr10g0283361 Helianthus annuus HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
HanXRQChr13g0396441 Helianthus annuus HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
Lsat_1_v5_gn_5_162080 Lactuca sativa HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
Sp4g23870 Schrenkiella parvula HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 67.5
THA.LOC104802033 Tarenaya hassleriana HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
THA.LOC104824431 Tarenaya hassleriana HOM05D001573 ORTHO05D001660 3.0e-06 56.2 40 65.0
Ah.04g151540 Amaranthus hybridus HOM05D001573 ORTHO05D001660 3.9e-06 55.8 40 65.0
AL4G39730 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 3.9e-06 55.8 40 67.5
EL10Ac3g07112 Beta vulgaris HOM05D001573 ORTHO05D001660 3.9e-06 55.8 40 65.0
AUR62024476 Chenopodium quinoa HOM05D001573 ORTHO05D001660 3.9e-06 55.8 40 65.0
AUR62026065 Chenopodium quinoa HOM05D001573 ORTHO05D001660 3.9e-06 55.8 40 65.0
Hund19142 Selenicereus undatus HOM05D001573 ORTHO05D001660 3.9e-06 55.8 40 65.0
Hund24689 Selenicereus undatus HOM05D001573 ORTHO05D001660 3.9e-06 55.8 40 65.0
Sc25g0005340 Simmondsia chinensis HOM05D001573 ORTHO05D001660 3.9e-06 55.8 40 65.0
AUR62039865 Chenopodium quinoa HOM05D001573 ORTHO05D001660 5.1e-06 55.5 40 65.0
Medtr1g053065 Medicago truncatula HOM05D001573 ORTHO05D001660 5.1e-06 55.5 40 62.5
GSVIVG01031532001 Vitis vinifera HOM05D001573 ORTHO05D001660 5.1e-06 55.5 41 63.4
CSS0043151 Camellia sinensis var. sinensis HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Cfa009808 Carpinus fangiana HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
CiPaw.13G155000 Carya illinoinensis HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
COL.COLO4_36454 Corchorus olitorius HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Haze_23172 Corylus avellana HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Dinv24903 Davidia involucrata HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Dinv30993 Davidia involucrata HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Dinv31110 Davidia involucrata HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Duzib150G1625 Durio zibethinus HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Thhalv10016972m.g Eutrema salsugineum HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Hma1.2p1_0606F.1_g188000 Hydrangea macrophylla HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Manes.14G004200 Manihot esculenta HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
QL01p004134 Quercus lobata HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
SEGI_27669 Sequoiadendron giganteum HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
Thecc.09G238700 Theobroma cacao HOM05D001573 ORTHO05D001660 6.7e-06 55.1 40 65.0
SGA_v2.0_scaffold3G01480 Striga asiatica HOM05D001573 ORTHO05D001660 8.8e-06 54.7 40 65.0


User provided reference genes

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