Gene: Solyc10g079360.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc10g079360.3
- Transcript Identifier Solyc10g079360.3.1
- Gene Type Coding gene
- Location SL4.0ch10 : 60020047-60025145 : negative
Gene Family Information
- ID HOM05D001573
- #Genes/#Species 406/100
- Phylogenetic origin
- ID ORTHO05D001660
- #Genes/#Species 373/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc10g079360.3.1
- uniprot A0A3Q7JF08
- gene_id Solyc10g079360
Descriptions
- Description Transcription initiation factor IIB (AHRD V3.3 *** A0A2G2YP06_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0080092 | ISO | PLAZA Integrative Orthology | regulation of pollen tube growth | AT2G41630 |
GO:0009960 | ISO | PLAZA Integrative Orthology | endosperm development | AT3G29380 |
GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT3G29380 |
GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT3G57370 |
GO:0055046 | ISO | PLAZA Integrative Orthology | microgametogenesis | AT3G57370 |
GO:0000769 | ISO | PLAZA Integrative Orthology | syncytium formation by mitosis without cytokinesis | AT3G29380 |
GO:0010183 | ISO | PLAZA Integrative Orthology | pollen tube guidance | AT2G41630 |
GO:0006352 | IBA IEA | GOA Database | DNA-templated transcription, initiation | |
GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
GO:0070897 | IEA | GOA Database | transcription preinitiation complex assembly | |
GO:0070897 | IEA | InterPro | transcription preinitiation complex assembly |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G41630 |
GO:0017025 | IBA | GOA Database | TBP-class protein binding | |
GO:0017025 | IEA | InterPro | TBP-class protein binding | |
GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0097550 | IBA | GOA Database | transcription preinitiation complex | |
GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT3G10330 |
GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
15.3.3.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb) |