Gene: AT2G41630

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G41630
  • Transcript Identifier AT2G41630.1
  • Gene Type Coding gene
  • Location Chr2 : 17355555-17357400 : negative

Gene Family Information

  • ID HOM05D001573
  • #Genes/#Species 406/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G41630.1
  • symbol TFIIB
  • Alias AtTFIIB1,TFIIB1,transcription factor IIB 1
  • uniprot P48512

Descriptions

  • Description transcription factor IIB
  • Computational description transcription factor IIB (TFIIB); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G10330.1); Has 1967 Blast hits to 1965 proteins in 361 species: Archae - 538; Bacteria - 1; Metazoa - 305; Fungi - 294; Plants - 195; Viruses - 14; Other Eukaryotes - 620 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IBA
Gene OntologyDNA-templated transcription, initiation1
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0070897
IEA
Gene Ontologytranscription preinitiation complex assembly
GO:0070897
IEA
InterProtranscription preinitiation complex assembly
GO:0080092
IMP
Gene Ontologyregulation of pollen tube growth2
GO:0010183
IMP
Gene Ontologypollen tube guidance2
GO:0009960
IMP
Gene Ontologyendosperm development2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017025
IEA
GOA DatabaseTBP-class protein binding
GO:0017025
IBA
Gene OntologyTBP-class protein binding1
GO:0017025
IEA
InterProTBP-class protein binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2
GO:0097550
IBA
Gene Ontologytranscription preinitiation complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013137 Zinc finger, TFIIB-type
IPR013763 Cyclin-like
IPR036915 Cyclin-like superfamily
IPR013150 Transcription factor TFIIB, cyclin-like domain
IPR000812 Transcription factor TFIIB
Mapman id Description
15.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb)