Gene: Sopen10g030000

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g030000
  • Transcript Identifier Sopen10g030000.2
  • Gene Type Coding gene
  • Location Spenn-ch10 : 77700685-77705972 : negative

Gene Family Information

  • ID HOM05D001573
  • #Genes/#Species 406/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g030000.2

Descriptions

  • Description Cyclin-like family protein | FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity | INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related , Cyclin-like , Transcription factor TFIIB, cyclin-related , Cyclin-related , Zinc finger, TFIIB-type , Cyclin | BEST Arabidopsis thaliana protein match is: transcription factor IIB
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0070897
IEA
InterProtranscription preinitiation complex assembly
GO:0010183
ISO
PLAZA Integrative Orthologypollen tube guidance AT2G41630
GO:0000769
ISO
PLAZA Integrative Orthologysyncytium formation by mitosis without cytokinesis AT3G29380
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis AT3G57370
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G57370
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT3G29380
GO:0009960
ISO
PLAZA Integrative Orthologyendosperm development AT3G29380
GO:0080092
ISO
PLAZA Integrative Orthologyregulation of pollen tube growth AT2G41630

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017025
IEA
InterProTBP-class protein binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G41630

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G10330
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G10330

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000812 Transcription factor TFIIB
IPR013763 Cyclin-like
IPR013150 Transcription factor TFIIB, cyclin-like domain
IPR036915 Cyclin-like superfamily
IPR013137 Zinc finger, TFIIB-type
Mapman id Description
35.1 not assigned.annotated