Gene: AT3G10330

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G10330
  • Transcript Identifier AT3G10330.1
  • Gene Type Coding gene
  • Location Chr3 : 3199907-3201642 : positive

Gene Family Information

  • ID HOM05D001573
  • #Genes/#Species 406/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G10330.1
  • Alias AtTFIIB2,TFIIB2,transcription factor IIB 2
  • uniprot Q9SS44

Descriptions

  • Description Cyclin-like family protein
  • Computational description Cyclin-like family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription factor IIB (TAIR:AT2G41630.1); Has 1989 Blast hits to 1976 proteins in 358 species: Archae - 539; Bacteria - 1; Metazoa - 303; Fungi - 308; Plants - 195; Viruses - 12; Other Eukaryotes - 631 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070897
IEA
Gene Ontologytranscription preinitiation complex assembly
GO:0070897
IEA
InterProtranscription preinitiation complex assembly
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IBA
Gene OntologyDNA-templated transcription, initiation1
GO:0006352
IEA
InterProDNA-templated transcription, initiation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017025
IEA
GOA DatabaseTBP-class protein binding
GO:0017025
IBA
Gene OntologyTBP-class protein binding1
GO:0017025
IEA
InterProTBP-class protein binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM, IBA
Gene Ontologynucleus1 2
GO:0005737
IDA
GOA Databasecytoplasm
GO:0005737
HDA
Gene Ontologycytoplasm2
GO:0097550
IBA
Gene Ontologytranscription preinitiation complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036915 Cyclin-like superfamily
IPR000812 Transcription factor TFIIB
IPR013763 Cyclin-like
IPR013137 Zinc finger, TFIIB-type
IPR013150 Transcription factor TFIIB, cyclin-like domain
Mapman id Description
15.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb)