Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39008H Brassica oleracea HOM05D005089 ORTHO05D006232 9.8e-74 280.0 140 100.0
BraA07t30920Z Brassica rapa HOM05D005089 ORTHO05D006232 2.1e-55 219.2 141 85.1
Sp5g20640 Schrenkiella parvula HOM05D005089 ORTHO05D006232 4.3e-45 184.9 146 73.3
BolC2t08297H Brassica oleracea HOM05D005089 ORTHO05D006232 4.7e-44 181.4 141 74.5
BcaB03g15324 Brassica carinata HOM05D005089 ORTHO05D006232 8.9e-43 177.2 140 70.7
BcaB05g24134 Brassica carinata HOM05D005089 ORTHO05D006232 8.9e-43 177.2 140 70.7
A07p32930 Brassica napus HOM05D005089 ORTHO05D006232 8.9e-43 177.2 140 70.7
C06p39150 Brassica napus HOM05D005089 ORTHO05D006232 8.9e-43 177.2 140 70.7
AT1G65700 Arabidopsis thaliana HOM05D005089 ORTHO05D006232 7.6e-42 174.1 140 69.3
BcaC03g14718 Brassica carinata HOM05D005089 ORTHO05D006232 1.7e-41 172.9 140 70.0
A02p13340 Brassica napus HOM05D005089 ORTHO05D006232 1.7e-41 172.9 140 70.0
C02p21600 Brassica napus HOM05D005089 ORTHO05D006232 1.7e-41 172.9 140 70.0
BraA02t06391Z Brassica rapa HOM05D005089 ORTHO05D006232 1.7e-41 172.9 140 70.0
THA.LOC104805669 Tarenaya hassleriana HOM05D005089 ORTHO05D006232 4.9e-41 171.4 140 70.0
Aa31LG2G2600 Aethionema arabicum HOM05D005089 ORTHO05D006232 8.4e-41 170.6 140 67.9
Thhalv10019364m.g Eutrema salsugineum HOM05D005089 ORTHO05D006232 1.4e-40 169.9 140 68.6
CARHR057510 Cardamine hirsuta HOM05D005089 ORTHO05D006232 1.9e-40 169.5 140 68.6
AL2G22830 Arabidopsis lyrata HOM05D005089 ORTHO05D006232 5.4e-40 167.9 140 67.1
Carub.0002s1152 Capsella rubella HOM05D005089 ORTHO05D006232 2.7e-39 165.6 140 67.9
THA.LOC104822183 Tarenaya hassleriana HOM05D005089 ORTHO05D006232 1.5e-37 159.8 140 63.6
CSS0039179 Camellia sinensis var. sinensis HOM05D005089 ORTHO05D006232 2.5e-37 159.1 140 62.9
SGA_v2.0_scaffold5G02979 Striga asiatica HOM05D005089 ORTHO05D006232 2.5e-37 159.1 140 62.9
Migut.K01198 Erythranthe guttata HOM05D005089 ORTHO05D006232 4.3e-37 158.3 140 62.9
SalBow4G2468 Salvia bowleyana HOM05D005089 ORTHO05D006232 5.6e-37 157.9 140 62.1
SalBow4G3279 Salvia bowleyana HOM05D005089 ORTHO05D006232 5.6e-37 157.9 140 62.1
PGSC0003DMG400005916 Solanum tuberosum HOM05D005089 ORTHO05D006232 7.3e-37 157.5 140 62.9
Actinidia28764 Actinidia chinensis HOM05D005089 ORTHO05D006232 9.6e-37 157.1 140 62.1
Actinidia35696 Actinidia chinensis HOM05D005089 ORTHO05D006232 9.6e-37 157.1 140 62.1
Psat7g128160 Pisum sativum HOM05D005089 ORTHO05D006232 9.6e-37 157.1 140 62.9
Cfa009723 Carpinus fangiana HOM05D005089 ORTHO05D006232 1.3e-36 156.8 140 62.1
Haze_23075 Corylus avellana HOM05D005089 ORTHO05D006232 1.3e-36 156.8 140 62.1
Potri.001G278000 Populus trichocarpa HOM05D005089 ORTHO05D006232 1.6e-36 156.4 140 62.1
Hma1.2p1_0034F.1_g021510 Hydrangea macrophylla HOM05D005089 ORTHO05D006232 2.1e-36 156.0 140 60.7
PGR083G0158 Punica granatum HOM05D005089 ORTHO05D006232 2.1e-36 156.0 140 62.9
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.8e-36 155.6 140 60.7
GSVIVG01024237001 Vitis vinifera HOM05D005089 ORTHO05D006232 2.8e-36 155.6 140 62.1
CSS0017333 Camellia sinensis var. sinensis HOM05D005089 ORTHO05D006232 3.6e-36 155.2 140 60.7
ClCG01G014710 Citrullus lanatus HOM05D005089 ORTHO05D006232 3.6e-36 155.2 140 61.4
Glyma.08G172900 Glycine max HOM05D005089 ORTHO05D006232 3.6e-36 155.2 140 62.1
Glyma.15G254600 Glycine max HOM05D005089 ORTHO05D006232 3.6e-36 155.2 140 62.1
Lalb_Chr16g0388771 Lupinus albus HOM05D005089 ORTHO05D006232 3.6e-36 155.2 140 62.1
Nitab4.5_0000428g0170 Nicotiana tabacum HOM05D005089 ORTHO05D006232 3.6e-36 155.2 140 62.1
TPR.G34897 Trifolium pratense HOM05D005089 ORTHO05D006232 3.6e-36 155.2 140 62.1
vmacro18488 Vaccinium macrocarpon HOM05D005089 ORTHO05D006232 3.6e-36 155.2 140 60.7
Lalb_Chr09g0333831 Lupinus albus HOM05D005089 ORTHO05D006232 4.8e-36 154.8 140 61.4
ATR0665G545 Amborella trichopoda HOM05D005089 ORTHO05D006232 6.2e-36 154.5 140 61.4
DCAR_006980 Daucus carota HOM05D005089 ORTHO05D006232 6.2e-36 154.5 140 60.0
Eucgr.B02461 Eucalyptus grandis HOM05D005089 ORTHO05D006232 6.2e-36 154.5 140 60.7
Hma1.2p1_0085F.1_g043900 Hydrangea macrophylla HOM05D005089 ORTHO05D006232 6.2e-36 154.5 140 60.7
SGA_v2.0_scaffold199G41253 Striga asiatica HOM05D005089 ORTHO05D006232 6.2e-36 154.5 140 60.7
TAR629G1547 Trochodendron aralioides HOM05D005089 ORTHO05D006232 6.2e-36 154.5 140 60.7
Ca_25486_v3 Cicer arietinum L. HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 62.1
MELO3C002181.2 Cucumis melo HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 60.7
CsaV3_1G007620 Cucumis sativus L. HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 60.7
Dinv28272 Davidia involucrata HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 60.7
Duzib213G0870 Durio zibethinus HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Gohir.A01G077100 Gossypium hirsutum HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Gohir.A11G278900 Gossypium hirsutum HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Gohir.D01G064600 Gossypium hirsutum HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Gohir.D11G289700 Gossypium hirsutum HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Gorai.002G085500 Gossypium raimondii HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Gorai.007G313600 Gossypium raimondii HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Phvul.001G036000 Phaseolus vulgaris HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Sabra09G0054800 Salix brachista HOM05D005089 ORTHO05D006232 8.1e-36 154.1 140 61.4
Actinidia32998 Actinidia chinensis HOM05D005089 ORTHO05D006232 1.1e-35 153.7 140 61.4
CiPaw.13G164200 Carya illinoinensis HOM05D005089 ORTHO05D006232 1.1e-35 153.7 135 62.2
Cc07_g12600 Coffea canephora HOM05D005089 ORTHO05D006232 1.1e-35 153.7 140 60.7
Rhsim09G0031900 Rhododendron simsii HOM05D005089 ORTHO05D006232 1.1e-35 153.7 140 60.0
Thecc.07G044300 Theobroma cacao HOM05D005089 ORTHO05D006232 1.1e-35 153.7 140 60.7
TPR.G35417 Trifolium pratense HOM05D005089 ORTHO05D006232 1.1e-35 153.7 135 63.7
unitig_748.g8445 Utricularia gibba HOM05D005089 ORTHO05D006232 1.1e-35 153.7 140 60.7
Nn4g23685 Nelumbo nucifera HOM05D005089 ORTHO05D006232 1.4e-35 153.3 140 61.4
Sc08g0006860 Simmondsia chinensis HOM05D005089 ORTHO05D006232 1.4e-35 153.3 140 60.7
CDE02G0546 Ceratophyllum demersum HOM05D005089 ORTHO05D006232 1.8e-35 152.9 140 60.0
CDE04G3341 Ceratophyllum demersum HOM05D005089 ORTHO05D006232 1.8e-35 152.9 140 60.0
Dinv19096 Davidia involucrata HOM05D005089 ORTHO05D006232 1.8e-35 152.9 140 60.0
Psat6g156280 Pisum sativum HOM05D005089 ORTHO05D006232 1.8e-35 152.9 140 60.7
Sed0024889 Sechium edule HOM05D005089 ORTHO05D006232 1.8e-35 152.9 140 60.7
Solyc06g073700.3 Solanum lycopersicum HOM05D005089 ORTHO05D006232 1.8e-35 152.9 140 60.7
Sopen06g030100 Solanum pennellii HOM05D005089 ORTHO05D006232 1.8e-35 152.9 140 60.7
HanXRQChr16g0532701 Helianthus annuus HOM05D005089 ORTHO05D006232 2.4e-35 152.5 135 61.5
Lsat_1_v5_gn_3_69640 Lactuca sativa HOM05D005089 ORTHO05D006232 2.4e-35 152.5 135 62.2
Lsat_1_v5_gn_8_114921 Lactuca sativa HOM05D005089 ORTHO05D006232 2.4e-35 152.5 135 62.2
Manes.02G144200 Manihot esculenta HOM05D005089 ORTHO05D006232 2.4e-35 152.5 140 60.0
Medtr4g084910 Medicago truncatula HOM05D005089 ORTHO05D006232 3.1e-35 152.1 135 63.0
Oeu012499.1 Olea europaea HOM05D005089 ORTHO05D006232 3.1e-35 152.1 140 60.0
Oeu012501.1 Olea europaea HOM05D005089 ORTHO05D006232 3.1e-35 152.1 140 60.0
Mapoly0066s0106 Marchantia polymorpha HOM05D005089 ORTHO05D006232 4.0e-35 151.8 140 59.3
Sed0026634 Sechium edule HOM05D005089 ORTHO05D006232 4.0e-35 151.8 140 60.0
EL10Ac4g08873 Beta vulgaris HOM05D005089 ORTHO05D006232 5.3e-35 151.4 140 60.0
CiPaw.14G122100 Carya illinoinensis HOM05D005089 ORTHO05D006232 5.3e-35 151.4 140 59.3
HanXRQChr09g0258941 Helianthus annuus HOM05D005089 ORTHO05D006232 5.3e-35 151.4 135 63.0
Lj5g0003197 Lotus japonicus HOM05D005089 ORTHO05D006232 5.3e-35 151.4 140 61.4
QL02p103790 Quercus lobata HOM05D005089 ORTHO05D006232 6.9e-35 151.0 137 60.6
CAN.G65.220 Capsicum annuum HOM05D005089 ORTHO05D006232 1.2e-34 150.2 140 60.0
COL.COLO4_09628 Corchorus olitorius HOM05D005089 ORTHO05D006232 1.2e-34 150.2 140 60.0
FAN03G0566 Fragaria x ananassa HOM05D005089 ORTHO05D006232 1.2e-34 150.2 140 59.3
Manes.01G184500 Manihot esculenta HOM05D005089 ORTHO05D006232 1.2e-34 150.2 140 59.3
QL10p035687 Quercus lobata HOM05D005089 ORTHO05D006232 1.2e-34 150.2 139 61.2
Duzib170G0036 Durio zibethinus HOM05D005089 ORTHO05D006232 2.0e-34 149.4 140 61.4
FvH4_7g03730 Fragaria vesca HOM05D005089 ORTHO05D006232 2.6e-34 149.1 140 59.3
FAN01G1873 Fragaria x ananassa HOM05D005089 ORTHO05D006232 2.6e-34 149.1 140 59.3
FAN06G3452 Fragaria x ananassa HOM05D005089 ORTHO05D006232 2.6e-34 149.1 140 59.3
RcHm_v2.0_Chr1g0326651 Rosa chinensis HOM05D005089 ORTHO05D006232 2.6e-34 149.1 140 59.3
arahy.Tifrunner.gnm1.ann1.806F9A Arachis hypogaea HOM05D005089 ORTHO05D006232 3.4e-34 148.7 140 58.6
arahy.Tifrunner.gnm1.ann1.V3120Y Arachis hypogaea HOM05D005089 ORTHO05D006232 3.4e-34 148.7 140 58.6
Os05g0594900 Oryza sativa ssp. japonica HOM05D005089 ORTHO05D006232 3.4e-34 148.7 135 60.7
Ciclev10023032m.g Citrus clementina HOM05D005089 ORTHO05D006232 4.5e-34 148.3 140 59.3
Pp3c5_26940 Physcomitrium patens HOM05D005089 ORTHO05D006232 4.5e-34 148.3 140 59.3
Aqoxy3G00031 Aquilegia oxysepala HOM05D005089 ORTHO05D006232 5.8e-34 147.9 140 57.9
MD14G1247500 Malus domestica HOM05D005089 ORTHO05D006232 7.6e-34 147.5 140 57.1
TWI81G0160 Tripterygium wilfordii HOM05D005089 ORTHO05D006232 9.9e-34 147.1 135 60.0
TWI36G1307 Tripterygium wilfordii HOM05D005089 ORTHO05D006232 1.3e-33 146.7 135 60.0
AUR62005504 Chenopodium quinoa HOM05D005089 ORTHO05D006232 1.7e-33 146.4 140 57.1
Prupe.1G565900 Prunus persica HOM05D005089 ORTHO05D006232 2.2e-33 146.0 140 57.1
MD06G1241400 Malus domestica HOM05D005089 ORTHO05D006232 3.8e-33 145.2 140 56.4
MBI01_g01233_MAGBIO Magnolia biondii HOM05D005089 ORTHO05D006232 4.9e-33 144.8 136 60.3
Prupe.5G245700 Prunus persica HOM05D005089 ORTHO05D006232 4.9e-33 144.8 140 56.4
ECA234G3971 Erigeron canadensis HOM05D005089 ORTHO05D006232 8.4e-33 144.1 135 59.3
Migut.C00419 Erythranthe guttata HOM05D005089 ORTHO05D006232 8.4e-33 144.1 131 58.8
Lj5g0002103 Lotus japonicus HOM05D005089 ORTHO05D006232 1.1e-32 143.7 140 58.6
Zm00001eb294900 Zea mays HOM05D005089 ORTHO05D006232 1.1e-32 143.7 134 59.0
Rhsim08G0023300 Rhododendron simsii HOM05D005089 ORTHO05D006232 2.7e-31 139.0 128 59.4
VMungo0647G0479 Vigna mungo HOM05D005089 ORTHO05D006232 4.6e-31 138.3 130 57.7
FAN10G3957 Fragaria x ananassa HOM05D005089 ORTHO05D006232 7.9e-31 137.5 158 51.9
PSO063G3703 Papaver somniferum HOM05D005089 ORTHO05D006232 1.0e-30 137.1 126 58.7
PSO782G1779 Papaver somniferum HOM05D005089 ORTHO05D006232 1.0e-30 137.1 126 58.7
Peaxi162Scf00526g00052 Petunia axillaris HOM05D005089 ORTHO05D006232 1.0e-30 137.1 128 61.7
Hund21682 Selenicereus undatus HOM05D005089 ORTHO05D006232 1.8e-30 136.3 128 57.8
EL10Ac1g01451 Beta vulgaris HOM05D005089 ORTHO05D006232 3.0e-30 135.6 128 57.8
PRCOL_00004091 Prasinoderma coloniale HOM05D005089 ORTHO05D006232 1.8e-27 126.3 140 48.6
SMO353G0002 Selaginella moellendorffii HOM05D005089 ORTHO05D006232 9.0e-27 124.0 130 47.7
MCO07G660 Micromonas commoda HOM05D005089 ORTHO05D006232 5.5e-24 114.8 134 48.5
AUR62013820 Chenopodium quinoa HOM05D005089 ORTHO05D006232 5.6e-21 104.8 131 50.4
AagrBONN_evm.TU.Sc2ySwM_368.1058 Anthoceros agrestis HOM05D005089 ORTHO05D006232 3.1e-19 99.0 106 54.7
Mapoly0068s0064 Marchantia polymorpha HOM05D005089 ORTHO05D006232 1.5e-18 96.7 110 50.0
CBR_g56602 Chara braunii HOM05D005089 ORTHO05D006232 7.6e-18 94.4 114 46.5
Nitab4.5_0012011g0030 Nicotiana tabacum HOM05D005089 ORTHO05D006232 1.4e-16 90.1 47 89.4
Nn050s41918 Nelumbo nucifera HOM05D005089 ORTHO05D006232 4.2e-16 88.6 64 73.4
Cre02.g142850 Chlamydomonas reinhardtii HOM05D005089 ORTHO05D006232 2.1e-15 86.3 136 36.8
TAR371G1221 Trochodendron aralioides HOM05D005089 ORTHO05D006232 2.1e-15 86.3 98 53.1
Ah.11g044150 Amaranthus hybridus HOM05D005089 ORTHO05D006232 1.1e-13 80.5 61 65.6
Medtr1g085050 Medicago truncatula HOM05D005089 ORTHO05D006232 1.1e-13 80.5 121 42.1
SEGI_23864 Sequoiadendron giganteum HOM05D005089 ORTHO05D006232 5.3e-11 71.6 40 80.0
SEGI_39652 Sequoiadendron giganteum HOM05D005089 ORTHO05D006232 5.3e-11 71.6 40 80.0
Haze_26565 Corylus avellana HOM05D005089 ORTHO05D006232 1.0e-06 57.4 48 52.1
Nitab4.5_0002184g0070 Nicotiana tabacum HOM05D005089 ORTHO05D006232 1.8e-06 56.6 31 80.6
Carub.0001s1875 Capsella rubella HOM05D003045 ORTHO05D003446 3.0e-06 55.8 124 30.6
CARHR019720 Cardamine hirsuta HOM05D003045 ORTHO05D003446 3.9e-06 55.5 124 30.6
Thhalv10009105m.g Eutrema salsugineum HOM05D003045 ORTHO05D003446 3.9e-06 55.5 124 30.6
Sp1g17040 Schrenkiella parvula HOM05D003045 ORTHO05D003446 3.9e-06 55.5 124 30.6
AT1G19120 Arabidopsis thaliana HOM05D003045 ORTHO05D003446 5.1e-06 55.1 124 30.6
AL1G31700 Arabidopsis lyrata HOM05D003045 ORTHO05D003446 6.7e-06 54.7 124 29.8
BcaB03g14463 Brassica carinata HOM05D003045 ORTHO05D003446 6.7e-06 54.7 124 29.8
BcaC07g41272 Brassica carinata HOM05D003045 ORTHO05D003446 6.7e-06 54.7 124 29.8
A09p59500 Brassica napus HOM05D003045 ORTHO05D003446 6.7e-06 54.7 124 29.8
C08p42780 Brassica napus HOM05D003045 ORTHO05D003446 6.7e-06 54.7 124 29.8
BolC8t51834H Brassica oleracea HOM05D003045 ORTHO05D003446 6.7e-06 54.7 124 29.8
BraA09t41327Z Brassica rapa HOM05D003045 ORTHO05D003446 6.7e-06 54.7 124 29.8
Migut.I01097 Erythranthe guttata HOM05D003045 ORTHO05D003446 6.7e-06 54.7 119 30.3
CiPaw.01G216600 Carya illinoinensis HOM05D003045 ORTHO05D003446 8.7e-06 54.3 116 31.0
Dinv20414 Davidia involucrata HOM05D003045 ORTHO05D003446 8.7e-06 54.3 137 27.0
Mapoly0101s0036 Marchantia polymorpha HOM05D003045 ORTHO05D003446 8.7e-06 54.3 117 31.6
QL05p003868 Quercus lobata HOM05D003045 ORTHO05D003446 8.7e-06 54.3 116 31.0
SGA_v2.0_scaffold122G33323 Striga asiatica HOM05D003045 ORTHO05D003446 8.7e-06 54.3 135 27.4


User provided reference genes

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