Gene: AT1G65700

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G65700
  • Transcript Identifier AT1G65700.1
  • Gene Type Coding gene
  • Location Chr1 : 24434463-24435870 : negative

Gene Family Information

  • ID HOM05D005089
  • #Genes/#Species 147/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G65700.1
  • symbol LSM8
  • Alias AtLSM8
  • full_name SM-like 8
  • uniprot Q8VYI0

Descriptions

  • Description Small nuclear ribonucleoprotein family protein
  • Computational description Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 967 Blast hits to 967 proteins in 213 species: Archae - 2; Bacteria - 0; Metazoa - 384; Fungi - 316; Plants - 144; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0016070
IMP
IBA
Gene OntologyRNA metabolic process1 2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0046540
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005688
IEA
GOA DatabaseU6 snRNP
GO:0005688
IBA
Gene OntologyU6 snRNP1
GO:0005688
IEA
InterProU6 snRNP
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0071011
IBA
Gene Ontologyprecatalytic spliceosome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR044642 U6 snRNA-associated Sm-like protein Lsm1/8
IPR034103 Sm-like protein Lsm8
Mapman id Description
16.2.3.8 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm8