Gene: SEGI_39652

General Information

Structural Information

  • Species Sequoiadendron giganteum
  • Gene Identifier SEGI_39652
  • Transcript Identifier SEGI_39652.1
  • Gene Type Coding gene
  • Location chr11 : 268512699-268522469 : negative

Gene Family Information

  • ID HOM05D005089
  • #Genes/#Species 147/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid SEGI_39652.1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT1G65700
GO:0000398
ISO
PLAZA Homology (enrichment)mRNA splicing, via spliceosome HOM05D005089

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G65700

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G65700
GO:0046540
ISO
PLAZA Homology (enrichment)U4/U6 x U5 tri-snRNP complex HOM05D005089
GO:0005688
ISO
PLAZA Homology (enrichment)U6 snRNP HOM05D005089

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR044642 U6 snRNA-associated Sm-like protein Lsm1/8
IPR010920 LSM domain superfamily
Mapman id Description
16.2.3.8 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm8