Gene: Os05g0594900

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os05g0594900
  • Transcript Identifier Os05t0594900-01
  • Gene Type Coding gene
  • Location chr05 : 29623192-29624800 : positive

Gene Family Information

  • ID HOM05D005089
  • #Genes/#Species 147/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os05t0594900-01
  • MSU-ID LOC_Os05g51650.1
  • uniprot Q5TKF9

Descriptions

  • Description Similar to U6 snRNA-associated Sm-like protein LSm8.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0016070
IBA
GOA DatabaseRNA metabolic process
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G65700
GO:0003723
IBA
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IBA
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005688
IBA
IEA
GOA DatabaseU6 snRNP
GO:0005688
IEA
InterProU6 snRNP
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR044642 U6 snRNA-associated Sm-like protein Lsm1/8
IPR034103 Sm-like protein Lsm8
IPR010920 LSM domain superfamily
Mapman id Description
16.2.3.8 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm8