Gene: Duzib213G0870

General Information

Structural Information

  • Species Durio zibethinus
  • Gene Identifier Duzib213G0870
  • Transcript Identifier Duzib213G0870.01
  • Gene Type Coding gene
  • Location NW_019167993.1 : 2171644-2172651 : positive

Gene Family Information

  • ID HOM05D005089
  • #Genes/#Species 147/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name LOC111275698
  • name XM_022861195.1
  • pid XP_022716930.1
  • id gene-LOC111275698
  • uniprot A0A6P5WLD7

Descriptions

  • product sm-like protein LSM8, transcript variant X2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT1G65700

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G65700

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005688
IEA
GOA DatabaseU6 snRNP
GO:0005688
IEA
InterProU6 snRNP
GO:0046540
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010920 LSM domain superfamily
IPR034103 Sm-like protein Lsm8
IPR001163 LSM domain, eukaryotic/archaea-type
IPR044642 U6 snRNA-associated Sm-like protein Lsm1/8
Mapman id Description
16.2.3.8 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm8