Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t28870H Brassica oleracea HOM05D000216 ORTHO05D000634 7.8e-85 317.0 150 100.0
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.2e-48 196.8 140 75.7
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 1.5e-48 196.4 138 74.6
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 1.5e-48 196.4 138 74.6
BolSC44t60847H Brassica oleracea HOM05D000216 ORTHO05D000634 1.5e-48 196.4 138 74.6
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 1.5e-48 196.4 138 74.6
BraSC140t45588Z Brassica rapa HOM05D000216 ORTHO05D000634 1.5e-48 196.4 138 74.6
BraSC151t45695Z Brassica rapa HOM05D000216 ORTHO05D000634 1.5e-48 196.4 138 74.6
CARHR281920 Cardamine hirsuta HOM05D000216 ORTHO05D000634 4.4e-48 194.9 140 75.0
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 3.8e-47 191.8 138 73.2
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 4.9e-47 191.4 138 73.2
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 8.4e-47 190.7 139 73.4
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 8.4e-47 190.7 139 73.4
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.1e-46 190.3 139 72.7
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.1e-46 190.3 139 72.7
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 1.9e-46 189.5 139 73.4
Lsat_1_v5_gn_9_5941 Lactuca sativa HOM05D000216 ORTHO05D000634 2.4e-46 189.1 139 72.7
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 2.4e-46 189.1 138 72.5
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 3.2e-46 188.7 139 72.7
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 3.2e-46 188.7 139 73.4
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 3.2e-46 188.7 138 71.7
Hma1.2p1_0094F.1_g047104 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 7.1e-46 187.6 139 73.4
PGSC0003DMG400020296 Solanum tuberosum HOM05D000216 ORTHO05D000634 7.1e-46 187.6 139 72.7
Nitab4.5_0005637g0010 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.6e-45 186.4 141 71.6
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.1e-45 186.0 139 71.2
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.1e-45 186.0 139 71.2
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-45 186.0 138 71.7
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-45 186.0 138 71.7
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-45 186.0 138 71.7
SHI35296 Sapria himalayana HOM05D000216 ORTHO05D000634 2.1e-45 186.0 146 69.2
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 2.7e-45 185.7 139 71.9
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 2.7e-45 185.7 139 71.9
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 6.0e-45 184.5 144 68.1
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.3e-44 183.3 139 71.2
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 1.7e-44 183.0 138 68.8
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.7e-44 183.0 138 70.3
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 1.7e-44 183.0 138 70.3
arahy.Tifrunner.gnm1.ann1.TW2HF4 Arachis hypogaea HOM05D000216 ORTHO05D000634 2.3e-44 182.6 141 70.2
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 2.3e-44 182.6 138 71.0
arahy.Tifrunner.gnm1.ann1.KRC0HM Arachis hypogaea HOM05D000216 ORTHO05D000634 3.9e-44 181.8 140 70.7
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 3.9e-44 181.8 141 70.2
SGA_v2.0_scaffold119G32687 Striga asiatica HOM05D000216 ORTHO05D000634 3.9e-44 181.8 141 67.4
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 6.6e-44 181.0 141 68.1
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.1e-43 180.3 138 70.3
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.9e-43 179.5 140 70.0
Lalb_Chr09g0335371 Lupinus albus HOM05D000216 ORTHO05D000634 1.9e-43 179.5 138 68.8
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund28617 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-43 179.1 138 68.8
Hund28153 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.6e-43 177.9 138 68.1
Psat4g147920 Pisum sativum HOM05D000216 ORTHO05D000634 9.6e-43 177.2 138 67.4
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.3e-42 176.8 139 70.5
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 1.3e-42 176.8 145 64.8
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 8.1e-42 174.1 137 68.6
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.4e-41 173.3 145 64.1
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 2.4e-41 172.6 139 68.3
ClCG01G011260 Citrullus lanatus HOM05D000216 ORTHO05D000634 6.9e-41 171.0 138 65.9
AUR62024082 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.5e-40 169.9 140 65.7
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 4.5e-40 168.3 139 67.6
CAN.G939.14 Capsicum annuum HOM05D000216 ORTHO05D000634 5.4e-38 161.4 84 91.7
CAN.G844.3 Capsicum annuum HOM05D000216 ORTHO05D000634 2.7e-37 159.1 139 61.9
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 6.0e-37 157.9 93 83.9
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 7.9e-37 157.5 141 61.7
GSVIVG01017094001 Vitis vinifera HOM05D000216 ORTHO05D000634 1.3e-36 156.8 125 68.8
Eucgr.J01352 Eucalyptus grandis HOM05D000216 ORTHO05D000634 2.3e-36 156.0 138 62.3
Lalb_Chr22g0361661 Lupinus albus HOM05D000216 ORTHO05D000634 3.0e-36 155.6 85 87.1
Nitab4.5_0001761g0170 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.9e-35 152.9 138 63.8
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.3e-34 150.2 85 84.7
HanXRQChr14g0436631 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-34 149.8 79 89.9
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 6.2e-34 147.9 79 89.9
arahy.Tifrunner.gnm1.ann1.ZJYB0J Arachis hypogaea HOM05D000216 ORTHO05D000473 2.4e-33 146.0 91 79.1
Hund25861 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-33 145.6 95 76.8
arahy.Tifrunner.gnm1.ann1.09TZAG Arachis hypogaea HOM05D000216 ORTHO05D000634 2.0e-32 142.9 109 67.0
HanXRQChr00c0300g0573171 Helianthus annuus HOM05D000216 ORTHO05D000634 9.9e-32 140.6 146 56.8
GSVIVG01019173001 Vitis vinifera HOM05D000216 ORTHO05D000634 2.9e-31 139.0 118 65.3
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 6.4e-31 137.9 139 58.3
Nitab4.5_0002868g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.1e-30 137.1 141 58.9
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.2e-29 133.7 79 81.0
Lj2P1224T100 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-29 133.3 71 88.7
Lj2P1227T99 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-29 133.3 71 88.7
MELO3C001093.2 Cucumis melo HOM05D000216 ORTHO05D000634 5.1e-28 128.3 108 67.6
HanXRQChr03g0073121 Helianthus annuus HOM05D000216 ORTHO05D000634 1.1e-27 127.1 61 98.4
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.9e-27 126.3 135 55.6
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 8.2e-26 120.9 85 64.7
Hund12597 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-25 119.0 84 66.7
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.2e-24 117.1 137 51.1
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.2e-24 117.1 137 51.1
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.2e-24 117.1 137 51.1
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.2e-24 117.1 137 51.1
FAN27G0873 Fragaria x ananassa HOM05D000743 ORTHO05D000580 7.6e-24 114.4 65 84.6
Gohir.D13G143950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.6e-24 114.4 69 81.2
Solyc12g096910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.7e-23 113.2 64 84.4
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-23 112.5 138 48.6
Nitab4.5_0001783g0070 Nicotiana tabacum HOM05D000216 ORTHO05D002807 6.5e-23 111.3 60 90.0
Lalb_Chr06g0173021 Lupinus albus HOM05D000216 ORTHO05D000634 2.5e-22 109.4 66 78.8
Aa31csc39G120 Aethionema arabicum HOM05D000216 ORTHO05D000634 1.1e-19 100.5 125 43.2
MELO3C027929.2 Cucumis melo HOM05D000216 ORTHO05D000634 4.3e-19 98.6 54 87.0
Psat5g134600 Pisum sativum HOM05D000216 ORTHO05D000634 1.3e-18 97.1 55 83.6
TPR.G17548 Trifolium pratense HOM05D000216 ORTHO05D000634 8.2e-18 94.4 56 80.4
HanXRQChr00c0988g0578121 Helianthus annuus HOM05D000216 ORTHO05D000634 4.5e-16 88.6 89 58.4
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.9e-16 88.2 137 43.8
HanXRQChr07g0188331 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-15 86.3 48 85.4
CAN.G1738.9 Capsicum annuum HOM05D000216 ORTHO05D000634 2.9e-15 85.9 92 56.5
SEGI_37297 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 5.5e-14 81.6 97 50.5
Nitab4.5_0000502g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.6e-13 79.0 137 40.9
Oeu062867.1 Olea europaea HOM05D000216 ORTHO05D000634 7.9e-13 77.8 140 37.9
Sc10g0006900 Simmondsia chinensis HOM05D000216 ORTHO05D000634 2.3e-12 76.3 90 51.1
Ah.10g028700 Amaranthus hybridus HOM05D029963 ORTHO05D026499 1.1e-11 73.9 39 89.7
Nn256s45908 Nelumbo nucifera HOM05D000216 ORTHO05D000634 1.5e-11 73.6 42 85.7
Nn2g14713 Nelumbo nucifera HOM05D000216 ORTHO05D000634 1.5e-11 73.6 42 85.7
Nn2g14718 Nelumbo nucifera HOM05D000216 ORTHO05D000634 1.5e-11 73.6 42 85.7
Nitab4.5_0000172g0280 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.3e-11 72.4 139 40.3
Oeu012803.1 Olea europaea HOM05D000216 ORTHO05D000634 3.3e-11 72.4 37 86.5
arahy.Tifrunner.gnm1.ann1.4QEF9J Arachis hypogaea HOM05D000216 ORTHO05D000634 4.3e-11 72.0 96 45.8
Migut.D01415 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.3e-10 70.5 59 66.1
Solyc01g017510.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.2e-10 69.7 137 38.7
arahy.Tifrunner.gnm1.ann1.7382T8 Arachis hypogaea HOM05D000216 ORTHO05D000634 1.1e-09 67.4 47 74.5
Solyc03g095380.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.4e-09 66.2 141 36.9
Gorai.001G101300 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.1e-09 65.9 37 83.8
Solyc10g011720.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.2e-06 55.5 26 92.3
Nn2g14716 Nelumbo nucifera HOM05D000216 ORTHO05D000634 7.2e-06 54.7 30 86.7


User provided reference genes

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