Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28007 Brassica carinata HOM05D001363 ORTHO05D002212 8.2e-42 173.3 89 100.0
BcaB06g26403 Brassica carinata HOM05D001363 ORTHO05D002212 6.7e-28 127.1 80 81.2
Carub.0003s2301 Capsella rubella HOM05D001363 ORTHO05D002212 6.7e-28 127.1 80 81.2
CARHR098810 Cardamine hirsuta HOM05D001363 ORTHO05D002212 2.6e-27 125.2 75 84.0
BcaB03g14645 Brassica carinata HOM05D001363 ORTHO05D002212 5.7e-27 124.0 75 82.7
Thhalv10021068m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 9.7e-27 123.2 80 77.5
Sp3g20580 Schrenkiella parvula HOM05D001363 ORTHO05D002212 1.7e-26 122.5 80 77.5
CARHR265640 Cardamine hirsuta HOM05D001363 ORTHO05D002212 4.8e-26 120.9 80 76.2
BcaB04g20490 Brassica carinata HOM05D001363 ORTHO05D002212 8.3e-26 120.2 75 82.7
AL3G37220 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 1.8e-25 119.0 80 73.8
BcaC09g49214 Brassica carinata HOM05D001363 ORTHO05D002212 2.4e-25 118.6 75 81.3
C01p41330 Brassica napus HOM05D001363 ORTHO05D002212 2.4e-25 118.6 75 81.3
BolC1t04092H Brassica oleracea HOM05D001363 ORTHO05D002212 2.4e-25 118.6 75 81.3
BraA01t03357Z Brassica rapa HOM05D001363 ORTHO05D002212 2.4e-25 118.6 75 81.3
CARHR050050 Cardamine hirsuta HOM05D001363 ORTHO05D002212 4.1e-25 117.9 68 86.8
THA.LOC104803046 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 4.1e-25 117.9 80 73.8
THA.LOC104808576 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 4.1e-25 117.9 80 73.8
AT3G22880 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 5.3e-25 117.5 80 73.8
Aa31LG8G9380 Aethionema arabicum HOM05D001363 ORTHO05D002212 7.0e-25 117.1 86 73.3
THA.LOC104804919 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.2e-24 116.3 80 72.5
RcHm_v2.0_Chr4g0393481 Rosa chinensis HOM05D001363 ORTHO05D002212 1.6e-24 115.9 75 74.7
Prupe.1G022500 Prunus persica HOM05D001363 ORTHO05D002212 2.0e-24 115.5 80 70.0
TAR636G1108 Trochodendron aralioides HOM05D001363 ORTHO05D002212 2.0e-24 115.5 75 74.7
Ca_28386_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 3.5e-24 114.8 81 72.8
RcHm_v2.0_Chr4g0392991 Rosa chinensis HOM05D001363 ORTHO05D002212 5.9e-24 114.0 75 72.0
CSS0014402 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D002212 1.0e-23 113.2 75 73.3
Ciclev10006682m.g Citrus clementina HOM05D001363 ORTHO05D002212 1.3e-23 112.8 80 68.8
Oeu064242.1 Olea europaea HOM05D000700 ORTHO05D000397 1.3e-23 112.8 81 67.9
Sabra08G0120800 Salix brachista HOM05D001363 ORTHO05D002212 1.3e-23 112.8 75 74.7
Glyma.10G243200 Glycine max HOM05D001363 ORTHO05D002212 1.7e-23 112.5 81 71.6
HanXRQChr03g0062511 Helianthus annuus HOM05D001363 ORTHO05D002212 1.7e-23 112.5 75 73.3
PSO461G0042 Papaver somniferum HOM05D001363 ORTHO05D002212 1.7e-23 112.5 75 72.0
A01p32310 Brassica napus HOM05D001363 ORTHO05D002212 2.2e-23 112.1 75 80.0
Manes.03G172700 Manihot esculenta HOM05D001363 ORTHO05D002212 2.2e-23 112.1 80 66.2
Oeu017766.1 Olea europaea HOM05D001363 ORTHO05D002212 2.2e-23 112.1 81 67.9
GSVIVG01018051001 Vitis vinifera HOM05D001363 ORTHO05D002212 2.2e-23 112.1 80 68.8
CANSAT78G1246 Cannabis sativa HOM05D001363 ORTHO05D002212 2.9e-23 111.7 75 70.7
Ca_10819_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 2.9e-23 111.7 81 71.6
Dinv44580 Davidia involucrata HOM05D001363 ORTHO05D002212 2.9e-23 111.7 75 72.0
Potri.008G158500 Populus trichocarpa HOM05D001363 ORTHO05D002212 2.9e-23 111.7 75 73.3
QL06p000836 Quercus lobata HOM05D001363 ORTHO05D002212 3.8e-23 111.3 80 67.5
Gorai.006G243000 Gossypium raimondii HOM05D001363 ORTHO05D002212 5.0e-23 110.9 82 64.6
Lalb_Chr21g0304801 Lupinus albus HOM05D001363 ORTHO05D002212 5.0e-23 110.9 81 67.9
Nn1g02467 Nelumbo nucifera HOM05D001363 ORTHO05D002212 5.0e-23 110.9 75 70.7
Phvul.007G062500 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 5.0e-23 110.9 73 74.0
arahy.Tifrunner.gnm1.ann1.MX9883 Arachis hypogaea HOM05D001363 ORTHO05D002212 6.5e-23 110.5 81 67.9
MBI11_g21320_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 6.5e-23 110.5 77 68.8
RcHm_v2.0_Chr4g0391091 Rosa chinensis HOM05D001363 ORTHO05D002212 6.5e-23 110.5 75 70.7
Gohir.A02G034500 Gossypium hirsutum HOM05D001363 ORTHO05D002212 8.5e-23 110.2 75 70.7
Gorai.005G045700 Gossypium raimondii HOM05D001363 ORTHO05D002212 8.5e-23 110.2 75 70.7
Lsat_1_v5_gn_7_66001 Lactuca sativa HOM05D001363 ORTHO05D002212 8.5e-23 110.2 75 69.3
Lj5g0010655 Lotus japonicus HOM05D001363 ORTHO05D002212 8.5e-23 110.2 81 69.1
PSO210G1487 Papaver somniferum HOM05D001363 ORTHO05D002212 8.5e-23 110.2 77 68.8
Atru.chr4.2334 Acer truncatum HOM05D001363 ORTHO05D002212 1.1e-22 109.8 80 67.5
Aqoxy2G03469 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 1.1e-22 109.8 77 68.8
Gohir.D09G221800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.1e-22 109.8 80 66.2
RhsimUnG0023700 Rhododendron simsii HOM05D001363 ORTHO05D002212 1.1e-22 109.8 75 72.0
RhsimUnG0184600 Rhododendron simsii HOM05D001363 ORTHO05D002212 1.1e-22 109.8 75 72.0
TWI09G0463 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.1e-22 109.8 80 67.5
Atru.chr4.2332 Acer truncatum HOM05D001363 ORTHO05D002212 1.5e-22 109.4 80 66.2
vmacro15381 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 1.5e-22 109.4 83 63.9
VMungo0720G0234 Vigna mungo HOM05D001363 ORTHO05D002212 1.5e-22 109.4 81 69.1
CDE10G0279 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 1.9e-22 109.0 77 71.4
COL.COLO4_21574 Corchorus olitorius HOM05D001363 ORTHO05D002212 1.9e-22 109.0 76 69.7
DCAR_002364 Daucus carota HOM05D001363 ORTHO05D002212 1.9e-22 109.0 75 70.7
ECA240G4262 Erigeron canadensis HOM05D001363 ORTHO05D002212 1.9e-22 109.0 75 73.3
Psat6g203440 Pisum sativum HOM05D001363 ORTHO05D002212 1.9e-22 109.0 81 69.1
Thecc.04G239600 Theobroma cacao HOM05D001363 ORTHO05D002212 1.9e-22 109.0 80 66.2
TWI53G1709 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.9e-22 109.0 80 66.2
Cpa.g.sc44.128 Carica papaya HOM05D001363 ORTHO05D002212 2.5e-22 108.6 80 65.0
Haze_11238 Corylus avellana HOM05D001363 ORTHO05D002212 2.5e-22 108.6 80 65.0
Duzib212G0488 Durio zibethinus HOM05D001363 ORTHO05D002212 2.5e-22 108.6 80 66.2
CAN.G1435.9 Capsicum annuum HOM05D001363 ORTHO05D002212 3.2e-22 108.2 75 73.3
Migut.G00388 Erythranthe guttata HOM05D001363 ORTHO05D002212 3.2e-22 108.2 75 69.3
FvH4_4g03620 Fragaria vesca HOM05D001363 ORTHO05D002212 3.2e-22 108.2 75 68.0
FAN12G0492 Fragaria x ananassa HOM05D001363 ORTHO05D002212 3.2e-22 108.2 75 68.0
FAN17G1407 Fragaria x ananassa HOM05D001363 ORTHO05D002212 3.2e-22 108.2 75 68.0
FAN17G1768 Fragaria x ananassa HOM05D002547 ORTHO05D002649 3.2e-22 108.2 73 72.6
FAN22G0300 Fragaria x ananassa HOM05D001363 ORTHO05D002212 3.2e-22 108.2 75 68.0
MD16G1200300 Malus domestica HOM05D001363 ORTHO05D002212 3.2e-22 108.2 81 66.7
Cc03_g04350 Coffea canephora HOM05D001363 ORTHO05D002212 4.2e-22 107.8 75 70.7
SalBow2G1003 Salvia bowleyana HOM05D001363 ORTHO05D002212 4.2e-22 107.8 75 68.0
Solyc09g082790.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 4.2e-22 107.8 68 76.5
Sopen09g031640 Solanum pennellii HOM05D001363 ORTHO05D002212 4.2e-22 107.8 68 76.5
PGSC0003DMG400030167 Solanum tuberosum HOM05D001363 ORTHO05D002212 4.2e-22 107.8 68 76.5
SGA_v2.0_scaffold191G40421 Striga asiatica HOM05D001363 ORTHO05D002212 4.2e-22 107.8 75 68.0
PGR142G0038 Punica granatum HOM05D001363 ORTHO05D002212 5.5e-22 107.5 80 63.8
Nitab4.5_0002652g0020 Nicotiana tabacum HOM05D001363 ORTHO05D002212 9.4e-22 106.7 75 72.0
Nitab4.5_0007166g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 9.4e-22 106.7 68 73.5
Duzib151G0676 Durio zibethinus HOM05D001363 ORTHO05D002212 1.2e-21 106.3 80 65.0
Sc13g0004780 Simmondsia chinensis HOM05D001363 ORTHO05D002212 1.2e-21 106.3 80 63.8
AUR62034680 Chenopodium quinoa HOM05D001363 ORTHO05D002212 1.6e-21 105.9 80 65.0
Sabra10G0061400 Salix brachista HOM05D001363 ORTHO05D002212 1.6e-21 105.9 75 69.3
arahy.Tifrunner.gnm1.ann1.QPK5VU Arachis hypogaea HOM05D001363 ORTHO05D002212 2.1e-21 105.5 81 67.9
Potri.010G081500 Populus trichocarpa HOM05D001363 ORTHO05D002212 2.7e-21 105.1 80 66.2
AUR62005320 Chenopodium quinoa HOM05D001363 ORTHO05D002212 3.6e-21 104.8 76 71.1
AUR62013971 Chenopodium quinoa HOM05D001363 ORTHO05D002212 3.6e-21 104.8 80 63.8
SGA_v2.0_scaffold353G49716 Striga asiatica HOM05D001363 ORTHO05D002212 3.6e-21 104.8 75 66.7
Lj6A646T83 Lonicera japonica HOM05D001363 ORTHO05D002212 8.0e-21 103.6 75 69.3
ClCG05G004820 Citrullus lanatus HOM05D001363 ORTHO05D002212 1.0e-20 103.2 73 67.1
MELO3C006496.2 Cucumis melo HOM05D001363 ORTHO05D002212 1.0e-20 103.2 81 64.2
CsaV3_3G012860 Cucumis sativus L. HOM05D001363 ORTHO05D002212 1.0e-20 103.2 81 64.2
Ah.04g154310 Amaranthus hybridus HOM05D001363 ORTHO05D002212 1.4e-20 102.8 80 60.0
Sed0025938 Sechium edule HOM05D001363 ORTHO05D002212 1.4e-20 102.8 76 67.1
TPR.G26112 Trifolium pratense HOM05D001363 ORTHO05D002212 2.3e-20 102.1 81 67.9
ATR0665G613 Amborella trichopoda HOM05D001363 ORTHO05D002212 4.0e-20 101.3 77 64.9
unitig_32.g11721 Utricularia gibba HOM05D001363 ORTHO05D002212 1.5e-19 99.4 76 65.8
Zm00001eb163340 Zea mays HOM05D001363 ORTHO05D002212 4.4e-19 97.8 74 62.2
Os11g0146800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 7.5e-19 97.1 73 63.0
Medtr1g102670 Medicago truncatula HOM05D001363 ORTHO05D002212 9.8e-19 96.7 60 76.7
Os12g0143800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 9.8e-19 96.7 68 66.2
HPP92_020346 Vanilla planifolia HOM05D001363 ORTHO05D002212 1.7e-18 95.9 77 61.0
Aqoxy7G01707 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 2.4e-17 92.0 80 55.0
Medtr5g042180 Medicago truncatula HOM05D002036 ORTHO05D001913 5.4e-17 90.9 76 67.1
Pp3c20_7190 Physcomitrium patens HOM05D001363 ORTHO05D002212 1.3e-15 86.3 68 63.2
SHI00528 Sapria himalayana HOM05D001363 ORTHO05D002212 2.9e-15 85.1 94 51.1
Mapoly0108s0001 Marchantia polymorpha HOM05D001363 ORTHO05D002212 1.1e-14 83.2 81 49.4
Mapoly0110s0049 Marchantia polymorpha HOM05D001363 ORTHO05D002212 1.1e-14 83.2 81 49.4
Peaxi162Scf00316g00323 Petunia axillaris HOM05D001363 ORTHO05D002212 4.7e-13 77.8 52 69.2
PSO210G7324 Papaver somniferum HOM05D001363 ORTHO05D002212 8.0e-13 77.0 75 50.7
SEGI_15380 Sequoiadendron giganteum HOM05D001363 ORTHO05D002212 3.0e-12 75.1 65 56.9
vmacro15377 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 5.2e-12 74.3 47 72.3
EL10Ac3g06502 Beta vulgaris HOM05D001363 ORTHO05D002212 4.4e-11 71.2 47 70.2
Gohir.A09G219600 Gossypium hirsutum HOM05D001363 ORTHO05D002212 4.4e-11 71.2 42 78.6
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 9.2e-09 63.5 94 45.7
CBR_g8885 Chara braunii HOM05D001363 ORTHO05D002212 1.3e-07 59.7 54 55.6
TPR.G15753 Trifolium pratense HOM05D001363 ORTHO05D002212 2.9e-07 58.5 78 47.4
Solyc08g036610.3 Solanum lycopersicum HOM05D001363 ORTHO05D051057 2.5e-06 55.5 38 68.4
Sopen08g011300 Solanum pennellii HOM05D001363 ORTHO05D051057 2.5e-06 55.5 38 68.4
Cre02.g141846 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D002212 7.3e-06 53.9 77 36.4


User provided reference genes

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