Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.4e-165 586.3 316 100.0
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 4.4e-138 495.0 325 87.1
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 4.7e-132 474.9 325 80.3
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 5.2e-131 471.5 325 79.7
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 2.6e-130 469.2 325 79.4
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.3e-129 466.8 325 79.1
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 4.4e-122 441.8 325 75.1
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.4e-120 436.0 325 72.9
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.2e-120 435.6 325 73.5
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 5.4e-120 434.9 325 73.5
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 4.5e-119 431.8 325 73.2
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 8.6e-118 427.6 325 72.6
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 6.6e-110 401.4 325 66.2
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 4.7e-108 395.2 325 65.5
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 6.2e-108 394.8 335 64.8
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 6.0e-95 351.7 319 60.8
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.3e-94 350.5 320 59.1
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 8.6e-94 347.8 319 59.2
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.9e-93 346.7 341 56.3
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.5e-93 346.3 319 60.2
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 2.5e-93 346.3 319 60.2
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 5.6e-93 345.1 319 58.3
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.6e-92 342.4 329 57.4
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.7e-92 342.0 319 59.9
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.4e-91 339.7 319 59.6
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.1e-91 339.3 329 56.8
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 3.1e-91 339.3 330 57.3
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 6.8e-91 338.2 328 56.4
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.2e-90 337.4 324 59.0
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.8e-90 335.1 329 56.2
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 7.6e-90 334.7 326 57.7
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 7.6e-90 334.7 319 57.7
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.3e-89 334.0 326 55.5
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 2.9e-89 332.8 319 57.4
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 3.8e-89 332.4 324 61.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 3.8e-89 332.4 324 58.0
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 6.4e-89 331.6 334 54.8
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 6.4e-89 331.6 329 56.5
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 6.4e-89 331.6 329 56.2
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 5.4e-88 328.6 328 55.2
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 9.3e-88 327.8 319 56.7
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.1e-87 326.6 319 55.8
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 2.1e-87 326.6 331 57.4
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.7e-87 326.2 325 54.8
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 4.6e-87 325.5 331 55.3
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.6e-87 325.5 324 55.6
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 7.8e-87 324.7 330 54.5
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 7.8e-87 324.7 329 56.2
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.3e-86 323.9 325 55.7
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.3e-86 323.9 325 55.4
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.3e-86 323.9 319 57.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.7e-86 323.6 321 56.1
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 2.3e-86 323.2 330 54.5
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 5.1e-86 322.0 354 52.8
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 6.6e-86 321.6 328 56.4
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 8.7e-86 321.2 330 53.9
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.1e-85 320.9 324 54.9
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.5e-85 320.5 324 55.6
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.9e-85 320.1 324 54.3
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.9e-85 320.1 339 52.8
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.9e-85 320.1 329 54.4
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.9e-85 320.1 324 55.2
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.9e-85 320.1 326 53.7
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.5e-85 319.7 328 53.4
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 5.6e-85 318.5 330 53.9
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 5.6e-85 318.5 363 50.4
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 7.3e-85 318.2 331 56.5
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.3e-85 318.2 322 55.3
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 7.3e-85 318.2 330 53.3
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 9.6e-85 317.8 329 54.4
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.3e-84 317.4 326 59.2
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.6e-84 317.0 331 56.2
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 3.6e-84 315.8 325 54.8
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 4.8e-84 315.5 366 49.7
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 4.8e-84 315.5 330 52.7
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 4.8e-84 315.5 328 53.0
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 6.2e-84 315.1 326 56.1
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.2e-84 315.1 331 55.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.1e-83 314.3 331 55.9
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.1e-83 314.3 331 55.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.4e-83 313.9 322 54.7
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.8e-83 313.5 296 58.4
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 1.8e-83 313.5 319 54.9
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.4e-83 313.2 329 54.4
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.1e-83 312.8 324 53.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 6.9e-83 311.6 332 54.2
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.4e-82 309.3 324 52.8
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 5.8e-82 308.5 322 53.7
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 2.9e-81 306.2 324 52.8
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 2.9e-81 306.2 323 54.5
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 3.8e-81 305.8 322 53.7
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 6.4e-81 305.1 330 52.1
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 8.4e-81 304.7 322 54.0
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.9e-80 303.5 330 52.1
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.9e-80 303.5 319 53.6
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.1e-80 301.6 329 52.3
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 7.1e-80 301.6 319 53.9
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.3e-78 296.6 324 51.5
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 6.6e-78 295.0 320 52.2
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.9e-77 293.5 393 46.1
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.3e-77 292.7 331 49.8
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 3.3e-77 292.7 321 52.6
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.4e-75 286.6 278 57.6
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 4.5e-74 282.3 323 49.8
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.9e-72 276.9 323 53.6
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.2e-72 275.8 329 51.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.9e-70 269.2 328 48.2
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 3.9e-70 269.2 276 55.1
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 5.1e-70 268.9 334 48.2
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.1e-69 267.7 329 48.0
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.9e-69 266.9 329 46.5
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.3e-69 265.8 315 50.5
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 5.8e-66 255.4 325 46.8
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.0e-62 244.6 323 45.5
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 7.4e-61 238.4 170 74.7
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.9e-56 223.8 310 44.5
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.0e-54 218.0 275 47.6
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 6.7e-54 215.3 324 40.7
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 4.1e-51 206.1 179 64.2
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 5.3e-51 205.7 319 40.8
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 7.9e-47 191.8 132 69.7
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.0e-45 187.2 338 38.8
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 9.7e-45 184.9 132 67.4
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.0e-42 177.2 132 66.7
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 2.5e-40 170.2 303 41.3
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 2.1e-39 167.2 129 59.7
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 4.7e-39 166.0 285 37.2
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 6.7e-38 162.2 139 59.7
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.1e-37 161.4 166 53.0
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.6e-34 150.2 129 62.0
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.0e-33 148.3 129 58.1
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.3e-33 147.9 145 53.8
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.7e-33 147.5 166 48.8
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 2.2e-33 147.1 175 49.1
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 6.1e-31 139.0 170 46.5
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.3e-30 137.1 132 51.5
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 9.7e-29 131.7 128 52.3
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.2e-28 130.6 177 42.9
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.6e-26 123.6 267 33.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 2.6e-26 123.6 126 50.8
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.7e-25 120.9 76 78.9
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.7e-25 120.9 76 78.9
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.7e-25 120.9 125 48.8
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 2.2e-25 120.6 76 78.9
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 2.5e-24 117.1 80 66.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 4.2e-24 116.3 136 47.1
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 8.0e-23 112.1 216 36.6
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 8.0e-23 112.1 170 40.6
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.0e-22 110.2 118 48.3
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 6.8e-22 109.0 264 29.2
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 6.8e-22 109.0 68 75.0
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 8.8e-22 108.6 263 31.2
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.4e-19 101.3 117 55.6
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.3e-17 94.7 114 43.9
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 2.5e-16 90.5 178 33.1
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 5.2e-14 82.8 59 76.3
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.4e-13 79.7 77 53.2
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 7.5e-13 79.0 59 67.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 7.5e-13 79.0 179 33.0
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.7e-09 67.8 59 61.0
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 7.2e-08 62.4 45 68.9
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.8e-06 57.8 190 28.4


User provided reference genes

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