Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 6.1e-239 830.9 572 100.0
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 4.7e-183 645.2 574 86.2
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 5.2e-182 641.7 550 82.9
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 5.2e-182 641.7 550 82.9
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 1.0e-153 547.7 574 79.6
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 3.9e-145 519.2 575 74.3
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 3.1e-142 509.6 574 74.9
BcaC01g06672 Brassica carinata HOM05D003327 ORTHO05D004535 4.3e-136 489.2 257 95.3
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 3.5e-93 346.7 485 64.5
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 1.4e-86 324.7 469 66.3
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 6.0e-85 319.3 471 71.3
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.1e-83 315.1 474 56.1
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 2.5e-83 313.9 471 69.6
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 7.3e-83 312.4 469 70.8
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 6.2e-82 309.3 468 70.7
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 8.0e-82 308.9 468 70.5
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 8.0e-82 308.9 468 70.5
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 5.2e-81 306.2 464 71.1
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 5.2e-81 306.2 464 71.1
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 6.8e-81 305.8 471 69.2
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 8.9e-81 305.4 465 70.1
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 3.7e-79 300.1 469 67.6
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 8.3e-79 298.9 471 68.4
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 2.4e-78 297.4 474 67.9
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 1.6e-77 294.7 469 67.2
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 1.7e-76 291.2 467 67.7
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 6.6e-76 289.3 465 66.5
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 6.6e-76 289.3 469 66.7
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.1e-75 288.5 476 50.0
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 1.9e-75 287.7 469 65.9
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 2.5e-75 287.3 483 59.8
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 4.3e-75 286.6 469 66.7
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 5.6e-75 286.2 469 65.7
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 7.3e-75 285.8 468 66.9
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 7.3e-75 285.8 471 66.5
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 9.5e-75 285.4 483 56.1
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 2.8e-74 283.9 484 58.1
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 8.1e-74 282.3 468 66.5
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 1.4e-73 281.6 483 47.8
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 1.8e-73 281.2 471 66.2
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 2.3e-73 280.8 483 58.0
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 4.0e-73 280.0 469 65.5
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 2.6e-72 277.3 469 66.5
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 5.8e-72 276.2 469 65.5
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 5.8e-72 276.2 469 65.5
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 5.8e-72 276.2 483 57.1
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 7.6e-72 275.8 469 65.5
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 7.6e-72 275.8 469 65.5
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 9.9e-72 275.4 466 64.4
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 2.2e-71 274.2 469 64.8
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 2.2e-71 274.2 470 64.9
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 3.7e-71 273.5 483 50.9
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 3.7e-71 273.5 483 55.3
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 4.9e-71 273.1 388 74.5
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 1.4e-70 271.6 469 65.5
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 1.4e-70 271.6 469 65.0
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 1.9e-70 271.2 469 65.7
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 3.2e-70 270.4 467 64.9
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 4.1e-70 270.0 469 64.8
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 5.4e-70 269.6 473 56.2
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 5.4e-70 269.6 469 64.0
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.1e-70 269.2 467 63.4
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 1.2e-69 268.5 469 64.6
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.6e-69 268.1 469 64.8
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 1.6e-69 268.1 469 65.0
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 2.1e-69 267.7 468 65.0
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 2.1e-69 267.7 467 63.2
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 2.7e-69 267.3 470 65.1
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 6.0e-69 266.2 469 64.8
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 6.0e-69 266.2 467 49.5
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.8e-69 265.8 463 41.0
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.0e-68 265.4 469 64.2
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 1.0e-68 265.4 463 64.8
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 1.7e-68 264.6 464 64.7
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 3.0e-68 263.8 469 64.2
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.9e-68 263.5 467 64.5
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 5.1e-68 263.1 467 64.5
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 1.5e-67 261.5 469 64.4
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.9e-67 261.2 467 64.2
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 1.9e-67 261.2 470 63.0
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 4.3e-67 260.0 470 61.9
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 4.3e-67 260.0 470 62.8
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.3e-67 260.0 468 62.0
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 5.6e-67 259.6 469 63.5
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.3e-67 259.2 460 65.2
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 7.3e-67 259.2 470 64.3
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 9.6e-67 258.8 467 63.8
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.1e-66 257.7 474 62.7
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 2.8e-66 257.3 469 60.8
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 3.6e-66 256.9 467 62.5
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 1.1e-65 255.4 469 63.8
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 1.4e-65 255.0 466 63.1
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 1.4e-65 255.0 469 63.1
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 1.4e-65 255.0 478 47.9
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.4e-65 255.0 469 62.3
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 3.1e-65 253.8 468 50.0
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 4.0e-65 253.4 469 63.3
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 6.8e-65 252.7 469 63.1
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 2.6e-64 250.8 469 63.1
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 2.6e-64 250.8 478 45.4
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 3.4e-64 250.4 469 40.5
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.7e-63 248.1 457 63.7
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 3.8e-63 246.9 465 61.5
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 6.4e-63 246.1 469 62.7
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.6e-61 241.5 467 62.1
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 6.0e-61 239.6 467 61.9
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 7.8e-61 239.2 469 57.1
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 3.9e-60 236.9 468 54.3
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 1.3e-58 231.9 467 61.0
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.8e-58 230.7 469 61.4
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 2.8e-58 230.7 307 66.4
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 3.6e-58 230.3 469 61.0
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 6.2e-58 229.6 469 61.2
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 9.0e-57 225.7 366 71.9
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 9.0e-57 225.7 470 60.4
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 7.6e-56 222.6 467 60.4
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 1.3e-55 221.9 467 59.5
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 2.2e-55 221.1 467 60.6
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 2.9e-55 220.7 491 45.2
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 3.8e-55 220.3 469 60.8
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 3.8e-55 220.3 437 49.7
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 5.4e-54 216.5 469 60.1
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 9.3e-54 215.7 467 60.2
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 2.7e-53 214.2 359 42.6
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 4.6e-53 213.4 342 42.7
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 1.0e-52 212.2 469 56.3
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 3.0e-52 210.7 472 41.1
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 3.9e-52 210.3 104 97.1
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 2.5e-51 207.6 470 45.7
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 2.8e-50 204.1 467 58.7
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 2.8e-50 204.1 451 48.8
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 2.8e-50 204.1 479 46.6
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 8.1e-50 202.6 470 45.1
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 1.8e-49 201.4 464 45.5
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 3.1e-49 200.7 464 45.5
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 1.9e-46 191.4 488 49.0
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 3.0e-44 184.1 117 74.4
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 3.0e-44 184.1 124 70.2
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 3.9e-44 183.7 477 48.6
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 3.9e-44 183.7 468 38.5
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 6.7e-44 183.0 291 75.3
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 2.5e-43 181.0 455 35.2
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 5.6e-43 179.9 469 37.1
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 2.1e-42 177.9 240 45.8
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 1.4e-41 175.3 122 68.9
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 1.4e-41 175.3 279 76.0
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.3e-41 173.3 485 50.3
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 2.6e-40 171.0 471 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 4.9e-39 166.8 122 63.1
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 3.9e-36 157.1 120 61.7
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 1.9e-35 154.8 468 54.3
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 5.7e-35 153.3 111 66.7
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 2.1e-34 151.4 99 71.7
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 4.8e-34 150.2 229 42.8
Nn2g15287 Nelumbo nucifera HOM05D003327 ORTHO05D004535 6.2e-34 149.8 99 78.8
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 1.2e-32 145.6 103 67.0
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 8.4e-31 139.4 236 47.0
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 2.9e-23 114.4 124 53.2
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 3.2e-22 110.9 92 58.7
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 3.3e-19 100.9 101 58.4
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 3.3e-19 100.9 249 31.3
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 6.3e-18 96.7 88 51.1
Lalb_Chr24g0399861 Lupinus albus HOM05D003327 ORTHO05D004535 2.0e-16 91.7 197 45.2
Ciclev10027259m.g Citrus clementina HOM05D003327 ORTHO05D024129 1.3e-15 89.0 63 73.0
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 1.6e-13 82.0 69 55.1
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 7.4e-11 73.2 96 44.8


User provided reference genes

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