Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 1.2e-118 429.9 216 100.0
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 7.2e-84 314.3 217 78.8
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 2.1e-83 312.8 222 76.6
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 6.1e-83 311.2 217 77.9
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 8.0e-83 310.8 223 77.1
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 2.3e-82 309.3 218 78.4
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 7.5e-73 277.7 219 72.6
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 6.2e-67 258.1 210 69.5
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 2.7e-62 242.7 204 65.2
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.8e-59 232.6 213 63.8
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.3e-53 213.0 202 59.4
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 2.5e-52 209.5 226 57.5
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 8.1e-43 177.9 115 74.8
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 6.9e-42 174.9 203 48.3
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 5.8e-33 145.2 168 47.0
AT1G80650 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 1.3e-32 144.1 157 59.2
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 9.6e-28 127.9 225 36.0
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 2.0e-25 120.2 195 39.0
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 2.6e-25 119.8 178 41.6
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 3.4e-25 119.4 215 34.9
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 9.9e-25 117.9 79 65.8
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 4.9e-24 115.5 126 45.2
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 8.4e-24 114.8 181 39.8
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.1e-23 114.4 176 38.6
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 1.9e-23 113.6 186 39.8
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 4.2e-23 112.5 204 36.3
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 4.2e-23 112.5 213 35.7
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 5.5e-23 112.1 188 35.1
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.1e-22 110.2 177 41.2
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 6.0e-22 108.6 139 38.8
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 1.0e-21 107.8 181 39.8
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 1.3e-21 107.5 210 34.3
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 2.3e-21 106.7 106 45.3
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 3.0e-21 106.3 83 50.6
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 3.9e-21 105.9 85 52.9
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 6.7e-21 105.1 150 40.7
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 8.7e-21 104.8 154 39.6
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 1.1e-20 104.4 82 54.9
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 1.5e-20 104.0 76 60.5
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.9e-20 103.6 198 36.4
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 4.3e-20 102.4 190 32.6
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 7.4e-20 101.7 83 51.8
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 9.6e-20 101.3 87 51.7
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 9.6e-20 101.3 134 39.6
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 1.3e-19 100.9 178 33.1
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 1.6e-19 100.5 125 41.6
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 2.1e-19 100.1 207 35.7
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 2.1e-19 100.1 83 50.6
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 2.1e-19 100.1 100 45.0
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.1e-19 100.1 83 50.6
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.8e-19 99.8 88 48.9
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 2.8e-19 99.8 83 55.4
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 2.8e-19 99.8 200 34.5
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 2.8e-19 99.8 109 42.2
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 3.7e-19 99.4 105 45.7
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 3.7e-19 99.4 178 38.2
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 3.7e-19 99.4 173 39.3
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.7e-19 99.4 83 50.6
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.7e-19 99.4 83 50.6
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 3.7e-19 99.4 104 48.1
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 3.7e-19 99.4 184 37.5
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 4.8e-19 99.0 83 51.8
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 6.2e-19 98.6 77 59.7
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 8.1e-19 98.2 95 47.4
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 8.1e-19 98.2 149 38.9
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 8.1e-19 98.2 149 38.9
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 1.1e-18 97.8 105 45.7
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 1.1e-18 97.8 79 54.4
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.4e-18 97.4 78 52.6
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 1.4e-18 97.4 78 52.6
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 1.4e-18 97.4 138 41.3
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 1.4e-18 97.4 186 33.3
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.8e-18 97.1 100 47.0
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.8e-18 97.1 135 40.7
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 1.8e-18 97.1 102 44.1
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 2.4e-18 96.7 141 39.0
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 2.4e-18 96.7 151 36.4
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 3.1e-18 96.3 172 34.3
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 3.1e-18 96.3 79 51.9
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.1e-18 96.3 138 36.2
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 3.1e-18 96.3 195 33.8
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 3.1e-18 96.3 85 48.2
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 4.0e-18 95.9 90 48.9
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 4.0e-18 95.9 79 54.4
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 5.3e-18 95.5 79 50.6
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 5.3e-18 95.5 202 32.2
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 6.9e-18 95.1 179 33.0
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 9.0e-18 94.7 90 47.8
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.2e-17 94.4 137 38.0
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 1.2e-17 94.4 111 43.2
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 1.2e-17 94.4 153 35.9
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.2e-17 94.4 79 51.9
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.5e-17 94.0 100 45.0
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 1.5e-17 94.0 199 31.7
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 2.0e-17 93.6 78 51.3
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 2.6e-17 93.2 174 31.0
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 3.4e-17 92.8 182 33.5
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 3.4e-17 92.8 182 34.1
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 3.4e-17 92.8 77 53.2
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 3.4e-17 92.8 148 35.8
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 4.5e-17 92.4 131 38.9
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 4.5e-17 92.4 91 46.2
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 4.5e-17 92.4 90 48.9
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 5.8e-17 92.0 80 50.0
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 7.6e-17 91.7 79 49.4
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 7.6e-17 91.7 83 50.6
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 7.6e-17 91.7 73 53.4
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 7.6e-17 91.7 86 47.7
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 7.6e-17 91.7 132 38.6
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 7.6e-17 91.7 77 51.9
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 7.6e-17 91.7 85 47.1
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 7.6e-17 91.7 137 35.8
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.0e-16 91.3 92 45.7
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 1.0e-16 91.3 141 36.9
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 1.0e-16 91.3 140 35.0
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 1.3e-16 90.9 121 40.5
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 2.9e-16 89.7 125 44.8
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 2.9e-16 89.7 114 41.2
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.9e-16 89.7 129 40.3
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 3.8e-16 89.4 77 46.8
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 3.8e-16 89.4 120 40.0
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.1e-15 87.8 161 34.2
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.1e-15 87.8 119 40.3
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.4e-15 87.4 63 57.1
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.9e-15 87.0 100 43.0
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 2.5e-15 86.7 133 37.6
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 2.5e-15 86.7 83 47.0
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.2e-15 86.3 193 31.6
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 3.2e-15 86.3 124 39.5
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 3.2e-15 86.3 82 45.1
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 3.2e-15 86.3 78 48.7
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 4.2e-15 85.9 135 37.8
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 4.2e-15 85.9 133 38.3
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 4.2e-15 85.9 108 39.8
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 4.2e-15 85.9 138 36.2
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.5e-15 85.5 80 50.0
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 5.5e-15 85.5 122 42.6
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 7.1e-15 85.1 111 42.3
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.1e-15 85.1 159 34.0
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 7.1e-15 85.1 174 34.5
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 7.1e-15 85.1 121 38.0
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.2e-14 84.3 79 45.6
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 1.2e-14 84.3 80 47.5
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.2e-14 84.3 215 30.7
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 1.2e-14 84.3 78 42.3
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.2e-14 84.3 143 35.7
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.6e-14 84.0 121 43.0
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 2.1e-14 83.6 76 46.1
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.1e-14 83.6 153 34.6
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 2.7e-14 83.2 77 49.4
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 2.7e-14 83.2 141 33.3
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.5e-14 82.8 151 33.8
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 3.5e-14 82.8 159 33.3
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 3.5e-14 82.8 84 45.2
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 3.5e-14 82.8 75 50.7
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 6.0e-14 82.0 154 31.2
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.0e-13 81.3 131 38.9
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.0e-13 81.3 146 37.7
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 1.3e-13 80.9 196 28.1
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 2.3e-13 80.1 79 44.3
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 3.9e-13 79.3 196 27.6
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 3.9e-13 79.3 128 36.7
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 6.7e-13 78.6 91 42.9
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 8.7e-13 78.2 92 41.3
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 1.9e-12 77.0 194 30.9
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.9e-12 77.0 134 33.6
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 5.7e-12 75.5 196 27.6
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 7.4e-12 75.1 82 41.5
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 1.6e-11 73.9 148 34.5
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 2.8e-11 73.2 196 26.5
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 2.0e-09 67.0 57 43.9
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 2.0e-09 67.0 46 67.4
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 3.4e-09 66.2 49 63.3
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 5.9e-09 65.5 179 33.5
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 2.5e-07 60.1 47 59.6
Mapoly0003s0184 Marchantia polymorpha HOM05D000399 ORTHO05D000304 7.2e-07 58.5 77 37.7
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 1.6e-06 57.4 59 37.3
Sed0001444 Sechium edule HOM05D000399 ORTHO05D000304 2.1e-06 57.0 169 28.4
Lalb_Chr04g0261301 Lupinus albus HOM05D000399 ORTHO05D000304 2.7e-06 56.6 165 24.8
Atru.chr5.793 Acer truncatum HOM05D000399 ORTHO05D000304 3.6e-06 56.2 171 28.7
FAN06G2417 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.6e-06 55.8 177 23.7
SalBow7G4661 Salvia bowleyana HOM05D000399 ORTHO05D010012 4.6e-06 55.8 39 51.3
COL.COLO4_23064 Corchorus olitorius HOM05D000399 ORTHO05D000304 6.1e-06 55.5 169 25.4
PGR031G2788 Punica granatum HOM05D000399 ORTHO05D000304 6.1e-06 55.5 170 28.2


User provided reference genes

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