Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21815 Brassica carinata HOM05D003944 ORTHO05D005521 1.4e-159 566.2 278 100.0
BcaB05g21771 Brassica carinata HOM05D003944 ORTHO05D005521 2.3e-66 256.5 217 66.4
BolC2t06138H Brassica oleracea HOM05D003944 ORTHO05D005521 4.3e-65 252.3 217 65.4
BcaC03g12954 Brassica carinata HOM05D003944 ORTHO05D005521 7.4e-65 251.5 217 65.4
C02p01820 Brassica napus HOM05D003944 ORTHO05D005521 7.4e-65 251.5 217 65.4
Sp6g38620 Schrenkiella parvula HOM05D003944 ORTHO05D005521 7.4e-65 251.5 217 65.4
Carub.0006s0308 Capsella rubella HOM05D003944 ORTHO05D005521 2.2e-64 250.0 217 64.1
Thhalv10012781m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 2.2e-64 250.0 217 64.5
BraA02t04801Z Brassica rapa HOM05D003944 ORTHO05D005521 8.2e-64 248.1 217 65.0
Aa31LG1G21200 Aethionema arabicum HOM05D003944 ORTHO05D005521 1.1e-63 247.7 214 64.5
CARHR209140 Cardamine hirsuta HOM05D003944 ORTHO05D005521 1.4e-63 247.3 217 64.1
AL6G13750 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 1.8e-63 246.9 217 63.6
THA.LOC104826889 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 6.9e-63 245.0 217 63.1
Dinv06172 Davidia involucrata HOM05D003944 ORTHO05D005521 1.2e-62 244.2 196 64.3
A03p01540 Brassica napus HOM05D003944 ORTHO05D005521 1.0e-61 241.1 204 67.2
AT5G04130 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 2.2e-61 240.0 217 62.2
CARHR084750 Cardamine hirsuta HOM05D003944 ORTHO05D005521 2.9e-61 239.6 217 61.3
THA.LOC104816412 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 2.9e-61 239.6 217 61.8
Eucgr.A02236 Eucalyptus grandis HOM05D003944 ORTHO05D005521 2.5e-60 236.5 218 58.3
MD12G1095800 Malus domestica HOM05D003944 ORTHO05D005521 2.5e-60 236.5 218 57.8
AL3G21600 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 3.2e-60 236.1 217 60.4
AT3G10270 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 3.2e-60 236.1 217 60.4
Carub.0003s0945 Capsella rubella HOM05D003944 ORTHO05D005521 4.2e-60 235.7 217 60.4
Sp3g08540 Schrenkiella parvula HOM05D003944 ORTHO05D005521 5.5e-60 235.3 217 60.4
C05p57880 Brassica napus HOM05D003944 ORTHO05D005521 7.2e-60 235.0 217 60.4
BolC5t34443H Brassica oleracea HOM05D003944 ORTHO05D005521 9.4e-60 234.6 217 59.9
Prupe.7G033800 Prunus persica HOM05D003944 ORTHO05D005521 1.6e-59 233.8 218 57.8
Peaxi162Scf00076g00421 Petunia axillaris HOM05D003944 ORTHO05D005521 2.1e-59 233.4 219 58.0
Aa31LG3G2850 Aethionema arabicum HOM05D003944 ORTHO05D005521 2.7e-59 233.0 233 57.9
A05p38840 Brassica napus HOM05D003944 ORTHO05D005521 6.1e-59 231.9 217 59.4
BraA05t22675Z Brassica rapa HOM05D003944 ORTHO05D005521 6.1e-59 231.9 217 59.4
Thhalv10020150m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 7.9e-59 231.5 217 59.0
TWI77G0996 Tripterygium wilfordii HOM05D003944 ORTHO05D005521 7.9e-59 231.5 218 56.9
Ciclev10004438m.g Citrus clementina HOM05D003944 ORTHO05D005521 1.0e-58 231.1 218 56.0
Solyc12g021230.2 Solanum lycopersicum HOM05D003944 ORTHO05D005521 1.0e-58 231.1 218 57.3
Sopen12g011160 Solanum pennellii HOM05D003944 ORTHO05D005521 1.0e-58 231.1 218 57.3
SGA_v2.0_scaffold69G23158 Striga asiatica HOM05D003944 ORTHO05D005521 1.0e-58 231.1 189 63.5
Thecc.05G129200 Theobroma cacao HOM05D003944 ORTHO05D005521 1.0e-58 231.1 217 59.9
CiPaw.09G048200 Carya illinoinensis HOM05D003944 ORTHO05D005521 1.4e-58 230.7 218 57.8
Atru.chr1.1433 Acer truncatum HOM05D003944 ORTHO05D005521 1.8e-58 230.3 218 56.9
CAN.G8.29 Capsicum annuum HOM05D003944 ORTHO05D005521 1.8e-58 230.3 218 58.3
MD14G1090600 Malus domestica HOM05D003944 ORTHO05D005521 3.0e-58 229.6 218 56.4
Potri.016G036200 Populus trichocarpa HOM05D003944 ORTHO05D005521 3.0e-58 229.6 218 56.9
FAN09G4102 Fragaria x ananassa HOM05D003944 ORTHO05D005521 3.9e-58 229.2 218 57.3
Nn7g36800 Nelumbo nucifera HOM05D003944 ORTHO05D005521 3.9e-58 229.2 219 56.6
GSVIVG01033639001 Vitis vinifera HOM05D003944 ORTHO05D005521 5.1e-58 228.8 218 57.8
RcHm_v2.0_Chr2g0125831 Rosa chinensis HOM05D003944 ORTHO05D005521 6.7e-58 228.4 218 56.9
Cfa020002 Carpinus fangiana HOM05D003944 ORTHO05D005521 8.8e-58 228.0 218 56.4
FAN02G4022 Fragaria x ananassa HOM05D003944 ORTHO05D005521 8.8e-58 228.0 218 56.9
QL07p011017 Quercus lobata HOM05D003944 ORTHO05D005521 8.8e-58 228.0 218 56.4
Lj1C1090G8 Lonicera japonica HOM05D003944 ORTHO05D005521 1.1e-57 227.6 218 56.0
CDE02G1045 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 2.6e-57 226.5 218 56.9
COL.COLO4_21471 Corchorus olitorius HOM05D003944 ORTHO05D005521 2.6e-57 226.5 217 58.5
DCAR_020575 Daucus carota HOM05D003944 ORTHO05D005521 2.6e-57 226.5 218 56.4
Oeu053358.4 Olea europaea HOM05D003944 ORTHO05D005521 2.6e-57 226.5 218 57.3
CANSAT64G1720 Cannabis sativa HOM05D003944 ORTHO05D005521 4.4e-57 225.7 218 55.5
CSS0025536 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 7.4e-57 224.9 218 56.4
COL.COLO4_37451 Corchorus olitorius HOM05D003944 ORTHO05D005521 7.4e-57 224.9 217 58.1
Manes.09G004300 Manihot esculenta HOM05D003944 ORTHO05D005521 7.4e-57 224.9 218 56.4
CSS0010587 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.3e-56 224.2 218 55.5
Nitab4.5_0004224g0030 Nicotiana tabacum HOM05D003944 ORTHO05D005521 1.3e-56 224.2 215 57.7
FvH4_6g25390 Fragaria vesca HOM05D003944 ORTHO05D005521 1.7e-56 223.8 218 56.4
SGA_v2.0_scaffold105G30285 Striga asiatica HOM05D003944 ORTHO05D005521 1.7e-56 223.8 218 56.0
Duzib128G0786 Durio zibethinus HOM05D003944 ORTHO05D005521 2.2e-56 223.4 217 57.6
TAR636G2487 Trochodendron aralioides HOM05D003944 ORTHO05D005521 2.2e-56 223.4 218 56.0
CSS0027330 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 2.8e-56 223.0 218 55.0
Sed0017237 Sechium edule HOM05D003944 ORTHO05D005521 2.8e-56 223.0 218 56.4
Haze_20232 Corylus avellana HOM05D003944 ORTHO05D005521 3.7e-56 222.6 226 54.4
SalBow6G5823 Salvia bowleyana HOM05D003944 ORTHO05D005521 4.8e-56 222.2 218 55.0
Potri.006G039400 Populus trichocarpa HOM05D003944 ORTHO05D005521 6.3e-56 221.9 218 55.0
vmacro07788 Vaccinium macrocarpon HOM05D003944 ORTHO05D005521 6.3e-56 221.9 218 55.5
Ca_08389_v3 Cicer arietinum L. HOM05D003944 ORTHO05D005521 8.2e-56 221.5 217 55.3
CDE04G2160 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 1.4e-55 220.7 218 55.5
AUR62018352 Chenopodium quinoa HOM05D003944 ORTHO05D005521 1.4e-55 220.7 218 53.7
Psat3g079040 Pisum sativum HOM05D003944 ORTHO05D005521 1.4e-55 220.7 217 55.8
AUR62030314 Chenopodium quinoa HOM05D003944 ORTHO05D005521 1.8e-55 220.3 218 53.7
Gorai.003G086700 Gossypium raimondii HOM05D003944 ORTHO05D005521 1.8e-55 220.3 217 57.1
ClCG04G005580 Citrullus lanatus HOM05D003944 ORTHO05D005521 2.4e-55 219.9 218 55.5
Gohir.D03G073100 Gossypium hirsutum HOM05D003944 ORTHO05D005521 2.4e-55 219.9 217 57.1
PSO339G2693 Papaver somniferum HOM05D003944 ORTHO05D005521 3.1e-55 219.5 218 54.1
Migut.J01650 Erythranthe guttata HOM05D003944 ORTHO05D005521 4.1e-55 219.2 218 54.1
Lalb_Chr14g0365791 Lupinus albus HOM05D003944 ORTHO05D005521 4.1e-55 219.2 217 55.3
PSO384G4619 Papaver somniferum HOM05D003944 ORTHO05D005521 4.1e-55 219.2 218 53.7
Sc13g0001110 Simmondsia chinensis HOM05D003944 ORTHO05D005521 4.1e-55 219.2 237 52.7
Lj1g0011822 Lotus japonicus HOM05D003944 ORTHO05D005521 5.3e-55 218.8 217 56.2
Nitab4.5_0005254g0010 Nicotiana tabacum HOM05D003944 ORTHO05D005521 5.3e-55 218.8 218 56.0
PGR031G2678 Punica granatum HOM05D003944 ORTHO05D005521 5.3e-55 218.8 214 55.1
TPR.G34631 Trifolium pratense HOM05D003944 ORTHO05D005521 5.3e-55 218.8 217 54.8
Actinidia01829 Actinidia chinensis HOM05D003944 ORTHO05D005521 9.1e-55 218.0 218 55.5
EL10Ac3g07244 Beta vulgaris HOM05D003944 ORTHO05D005521 1.2e-54 217.6 218 54.1
CsaV3_4G029550 Cucumis sativus L. HOM05D003944 ORTHO05D005521 1.2e-54 217.6 218 55.0
Medtr7g089790 Medicago truncatula HOM05D003944 ORTHO05D005521 2.0e-54 216.9 217 54.8
ECA248G1744 Erigeron canadensis HOM05D003944 ORTHO05D005521 2.6e-54 216.5 218 54.1
Gohir.A02G105903 Gossypium hirsutum HOM05D003944 ORTHO05D005521 3.5e-54 216.1 217 56.2
Glyma.03G127300 Glycine max HOM05D003944 ORTHO05D005521 4.5e-54 215.7 217 54.4
arahy.Tifrunner.gnm1.ann1.20HJGU Arachis hypogaea HOM05D003944 ORTHO05D005521 1.7e-53 213.8 218 53.7
MSTRG.19800 Avicennia marina HOM05D003944 ORTHO05D005521 1.7e-53 213.8 218 53.2
Hund19091 Selenicereus undatus HOM05D003944 ORTHO05D005521 1.7e-53 213.8 218 53.2
Rhsim03G0038900 Rhododendron simsii HOM05D003944 ORTHO05D005521 2.2e-53 213.4 225 53.8
Ah.04g150900 Amaranthus hybridus HOM05D003944 ORTHO05D005521 2.9e-53 213.0 231 50.6
arahy.Tifrunner.gnm1.ann1.L41URX Arachis hypogaea HOM05D003944 ORTHO05D005521 3.8e-53 212.6 218 53.2
ATR0759G018 Amborella trichopoda HOM05D003944 ORTHO05D005521 5.0e-53 212.2 217 54.8
Lsat_1_v5_gn_5_157080 Lactuca sativa HOM05D003944 ORTHO05D005521 5.0e-53 212.2 218 52.3
Glyma.19G130000 Glycine max HOM05D003944 ORTHO05D005521 6.5e-53 211.8 217 53.9
Aqoxy2G00418 Aquilegia oxysepala HOM05D003944 ORTHO05D005521 8.5e-53 211.5 217 53.0
HanXRQChr01g0008211 Helianthus annuus HOM05D003944 ORTHO05D005521 8.5e-53 211.5 217 52.1
Os01g0268300 Oryza sativa ssp. japonica HOM05D003944 ORTHO05D005521 1.9e-52 210.3 215 52.6
Phvul.001G123100 Phaseolus vulgaris HOM05D003944 ORTHO05D005521 1.9e-52 210.3 217 53.0
Zm00001eb128720 Zea mays HOM05D003944 ORTHO05D005521 1.9e-52 210.3 215 53.5
BraA03t09530Z Brassica rapa HOM05D003944 ORTHO05D005521 2.5e-52 209.9 136 76.5
VMungo1383G0013 Vigna mungo HOM05D003944 ORTHO05D005521 7.2e-52 208.4 216 53.2
Cc06_g19400 Coffea canephora HOM05D003944 ORTHO05D005521 2.1e-51 206.8 217 53.5
HPP92_028465 Vanilla planifolia HOM05D003944 ORTHO05D005521 2.3e-50 203.4 227 51.5
BcaB01g05767 Brassica carinata HOM05D003944 ORTHO05D005521 3.9e-50 202.6 194 61.3
Cpa.g.sc5.163 Carica papaya HOM05D003944 ORTHO05D005521 6.3e-48 195.3 193 57.5
Sabra16G0038300 Salix brachista HOM05D003944 ORTHO05D005521 4.1e-47 192.6 167 58.7
BcaNung05531 Brassica carinata HOM05D003944 ORTHO05D005521 7.0e-47 191.8 193 57.5
SHI24526 Sapria himalayana HOM05D003944 ORTHO05D005521 3.5e-46 189.5 235 47.7
CSS0028458 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.7e-45 187.2 134 66.4
SGA_v2.0_scaffold3G01719 Striga asiatica HOM05D003944 ORTHO05D005521 2.2e-45 186.8 241 47.7
Sabra16G0038600 Salix brachista HOM05D003944 ORTHO05D005521 5.0e-45 185.7 166 57.2
Mapoly0001s0398 Marchantia polymorpha HOM05D003944 ORTHO05D005521 7.2e-44 181.8 217 46.1
Sp6g38630 Schrenkiella parvula HOM05D003944 ORTHO05D005521 3.6e-43 179.5 137 63.5
Sabra06G0026500 Salix brachista HOM05D003944 ORTHO05D005521 1.0e-42 177.9 191 53.4
Pp3c19_5200 Physcomitrium patens HOM05D003944 ORTHO05D005521 5.2e-42 175.6 217 45.2
FAN05G2619 Fragaria x ananassa HOM05D003944 ORTHO05D005521 6.8e-42 175.3 187 52.9
AL6G13730 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 1.5e-41 174.1 140 60.0
Pp3c22_3710 Physcomitrium patens HOM05D003944 ORTHO05D005521 1.7e-40 170.6 217 43.8
AT5G04110 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 2.2e-40 170.2 140 57.9
BcaC06g32114 Brassica carinata HOM05D003944 ORTHO05D000588 4.8e-40 169.1 208 46.2
CBR_g48715 Chara braunii HOM05D003944 ORTHO05D005521 6.3e-40 168.7 214 43.9
Carub.0006s0306 Capsella rubella HOM05D003944 ORTHO05D005521 1.8e-39 167.2 140 57.1
C09p72740 Brassica napus HOM05D003944 ORTHO05D005521 4.1e-39 166.0 138 57.2
BolC9t60013H Brassica oleracea HOM05D003944 ORTHO05D005521 4.1e-39 166.0 138 57.2
SMO356G0312 Selaginella moellendorffii HOM05D003944 ORTHO05D005521 4.1e-39 166.0 223 42.6
A10p32020 Brassica napus HOM05D003944 ORTHO05D005521 5.3e-39 165.6 138 58.0
BraA10t45246Z Brassica rapa HOM05D003944 ORTHO05D005521 2.7e-38 163.3 138 57.2
SalBow1G3529 Salvia bowleyana HOM05D003944 ORTHO05D005521 5.9e-38 162.2 111 70.3
SalBow1G6386 Salvia bowleyana HOM05D003944 ORTHO05D005521 5.9e-38 162.2 111 70.3
AagrBONN_evm.TU.Sc2ySwM_228.2859 Anthoceros agrestis HOM05D003944 ORTHO05D005521 7.7e-38 161.8 131 58.0
CARHR209160 Cardamine hirsuta HOM05D003944 ORTHO05D005521 2.9e-37 159.8 132 60.6
BcaB01g05883 Brassica carinata HOM05D003944 ORTHO05D005521 8.5e-37 158.3 142 54.9
C03p01880 Brassica napus HOM05D003944 ORTHO05D005521 8.5e-37 158.3 142 54.9
BolC3t12741H Brassica oleracea HOM05D003944 ORTHO05D005521 8.5e-37 158.3 142 54.9
MELO3C019090.2 Cucumis melo HOM05D003944 ORTHO05D005521 2.5e-36 156.8 249 41.8
A03p01530 Brassica napus HOM05D003944 ORTHO05D005521 9.4e-36 154.8 125 58.4
MCO09G035 Micromonas commoda HOM05D003944 ORTHO05D005521 8.8e-34 148.3 210 40.0
PRCOL_00004441 Prasinoderma coloniale HOM05D003944 ORTHO05D005521 1.2e-33 147.9 216 38.9
BcaB01g05766 Brassica carinata HOM05D003944 ORTHO05D005521 1.6e-30 137.5 179 44.1
Cre10.g440750 Chlamydomonas reinhardtii HOM05D003944 ORTHO05D005521 2.0e-30 137.1 223 38.1
unitig_899.g15645 Utricularia gibba HOM05D003944 ORTHO05D005521 2.0e-17 94.0 124 45.2
Actinidia34659 Actinidia chinensis HOM05D003944 ORTHO05D056955 1.2e-11 74.7 46 76.1
vmacro00690 Vaccinium macrocarpon HOM05D003944 ORTHO05D426535 9.8e-09 65.1 139 35.3
SEGI_00826 Sequoiadendron giganteum HOM05D003944 ORTHO05D005521 3.2e-07 60.1 49 55.1
SalBow8G1821 Salvia bowleyana HOM05D001295 ORTHO05D002125 4.6e-06 56.2 64 50.0


User provided reference genes

Program Settings