Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 2159.8 1174 100.0
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 2152.9 1181 99.4
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 2144.4 1177 99.2
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 2124.4 1179 98.2
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 2122.1 1185 97.7
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 2030.0 1179 91.7
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1978.8 1184 89.4
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1978.8 1184 89.4
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1978.0 1185 89.7
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1935.6 1184 88.6
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1917.5 1183 87.7
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1916.4 1169 89.6
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1914.0 1183 88.6
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1818.1 1185 85.1
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1689.1 1190 76.7
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1574.3 1199 72.9
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1568.5 1200 71.6
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1567.4 1200 72.9
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1561.6 1204 72.5
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1546.9 1210 71.6
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1544.3 1167 72.8
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1539.6 1198 72.7
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1538.9 1197 71.8
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1536.9 1198 72.1
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1535.8 1201 72.2
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1535.8 1197 71.8
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1530.8 1201 71.7
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1529.6 1199 71.6
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1526.1 1264 69.1
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1525.8 1198 71.6
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1524.2 1215 71.9
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1523.5 1200 71.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1520.8 1200 70.1
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1520.4 1199 71.3
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1519.6 1200 70.8
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1518.8 1210 71.7
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1518.1 1195 71.2
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1515.0 1200 69.5
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1515.0 1205 70.9
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1510.4 1256 68.6
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1509.2 1190 70.8
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1504.6 1197 69.5
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1502.6 1200 70.2
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1502.6 1212 71.4
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1498.4 1177 71.5
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1496.1 1198 70.9
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1494.9 1207 70.3
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1494.6 1203 69.2
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1493.0 1192 71.0
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1491.9 1208 68.5
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1489.9 1176 70.3
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1489.2 1154 70.1
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1489.2 1200 67.8
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1488.8 1206 67.7
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1487.2 1197 68.5
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1487.2 1215 69.2
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1487.2 1208 68.2
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1486.1 1199 69.7
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1482.2 1217 67.6
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1482.2 1195 69.5
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1479.5 1192 67.2
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1479.5 1176 69.6
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1478.4 1205 68.8
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1477.2 1196 69.1
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1474.1 1156 70.1
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1473.4 1195 69.2
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1473.0 1210 67.3
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1467.2 1202 68.0
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1466.4 1171 70.7
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1466.4 1221 69.1
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1465.7 1213 68.3
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1460.7 1199 68.1
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1459.1 1211 68.0
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1457.6 1230 67.5
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1456.8 1141 71.7
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1454.5 1200 67.5
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1452.6 1117 71.7
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1451.4 1188 68.4
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1449.1 1210 68.3
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1441.0 1214 66.0
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1436.0 1192 65.9
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1419.8 1182 68.4
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1410.2 1217 65.8
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1407.5 1171 67.0
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1406.0 1298 62.8
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1403.3 1229 64.4
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1400.2 1156 67.6
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1399.8 1403 60.4
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1399.4 1211 67.1
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1397.9 1069 72.6
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1397.1 1195 65.3
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1379.8 1182 66.3
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1359.4 1179 64.1
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1352.0 1202 66.2
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1331.6 1190 63.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1310.8 1181 64.7
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1306.2 1214 61.5
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1288.5 1210 60.6
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1287.7 879 75.7
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1274.2 1193 61.3
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1272.3 790 85.6
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1253.0 931 72.8
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1218.4 1238 57.4
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1218.0 873 74.2
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1129.0 814 75.2
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1123.2 1197 52.1
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1102.0 842 70.9
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 7.0e-298 1027.7 761 73.2
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.6e-270 935.6 899 62.4
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 4.7e-254 882.1 667 68.8
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 3.4e-252 875.9 963 56.5
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.6e-249 867.1 810 62.5
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.5e-236 823.9 926 56.0
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.8e-190 670.2 626 60.5
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.1e-178 631.7 532 62.6
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.3e-171 608.2 962 40.0
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 3.2e-157 560.5 402 69.4
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 5.4e-157 559.7 831 47.3
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.1e-144 517.3 292 84.6
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.6e-140 505.0 373 72.7
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 7.6e-127 459.5 1149 31.8
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 1.3e-126 458.8 751 43.9
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 5.1e-123 446.8 444 59.9
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.0e-115 422.5 300 70.7
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 2.4e-109 401.4 237 80.6
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 4.2e-101 374.0 374 63.1
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.6e-100 372.1 312 66.0
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 9.0e-96 356.3 1262 27.3
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.2e-84 319.3 209 78.0
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.1e-84 317.0 209 77.5
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 2.8e-81 308.1 212 70.3
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 3.7e-81 307.8 206 71.8
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 3.7e-81 307.8 206 71.8
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.4e-80 305.8 391 53.7
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 1.0e-78 299.7 170 82.9
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 8.8e-75 286.6 321 54.5
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 1.1e-74 286.2 224 67.0
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.7e-70 272.3 379 52.5
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.6e-66 258.5 360 54.7
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 9.7e-66 256.5 332 51.5
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.5e-55 221.1 335 46.9
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 2.7e-52 211.8 133 77.4
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.0e-51 209.9 168 65.5
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.5e-50 206.1 136 75.7
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-49 203.0 160 66.2
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.2e-49 202.2 201 63.7
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 2.7e-47 195.3 311 48.2
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 5.4e-40 171.0 113 71.7
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 8.9e-35 153.7 77 97.4
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.4e-34 151.8 94 74.5
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.9e-32 146.0 92 79.3
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 4.1e-32 144.8 233 46.8
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 5.4e-32 144.4 83 79.5
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.0e-30 138.7 89 73.0
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.0e-30 137.9 156 51.9
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 7.3e-29 134.0 104 71.2
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 5.2e-27 127.9 116 68.1
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 3.7e-25 121.7 129 55.8
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.0e-22 113.6 114 61.4
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 6.6e-22 110.9 57 91.2
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 6.6e-22 110.9 218 38.1
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.1e-21 110.2 57 93.0
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 2.5e-21 109.0 57 91.2
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 2.1e-20 105.9 55 85.5
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 3.6e-20 105.1 65 76.9
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 4.7e-20 104.8 59 93.2
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 1.5e-18 99.8 71 70.4
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.9e-17 95.5 80 57.5
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 8.4e-17 94.0 97 60.8
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.5e-15 88.6 80 58.8
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 4.6e-15 88.2 77 57.1
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 3.6e-12 78.6 117 41.9
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 6.2e-12 77.8 70 62.9
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 4.4e-10 71.6 41 78.0
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 1.3e-09 70.1 149 41.6
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 1.6e-07 63.2 113 39.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 7.8e-07 60.8 68 48.5
BcaC02g12045 Brassica carinata HOM05D048261 ORTHO05D039052 8.7e-06 57.4 49 69.4


User provided reference genes

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