Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.8e-179 632.5 328 100.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 9.4e-152 540.4 328 82.9
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.3e-136 488.4 327 74.9
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 8.0e-135 484.2 330 73.3
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 6.8e-134 481.1 328 73.8
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.2e-133 480.3 328 73.8
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 2.9e-132 475.7 328 73.8
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 3.7e-132 475.3 325 72.6
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.2e-130 470.3 326 73.0
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 4.6e-130 468.4 327 72.5
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.9e-128 463.0 324 71.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 3.3e-128 462.2 328 70.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 4.3e-128 461.8 345 68.1
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 7.3e-128 461.1 329 69.3
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.8e-127 459.1 330 70.9
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.8e-127 459.1 330 70.6
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 3.6e-127 458.8 328 70.4
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 4.7e-127 458.4 353 68.0
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.4e-126 456.8 329 70.8
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 3.1e-126 455.7 329 69.9
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 4.0e-126 455.3 329 70.5
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 6.8e-126 454.5 327 69.1
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.5e-125 453.4 332 69.9
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.5e-125 453.4 330 70.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.0e-125 453.0 331 68.0
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 3.4e-125 452.2 327 70.9
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 4.4e-125 451.8 329 71.1
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.4e-125 451.8 329 68.4
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 5.8e-125 451.4 327 67.9
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.5e-125 451.1 328 69.8
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 7.5e-125 451.1 330 70.9
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 4.9e-124 448.4 329 69.0
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 4.9e-124 448.4 327 68.8
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 8.3e-124 447.6 330 68.8
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 8.3e-124 447.6 329 69.9
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 8.3e-124 447.6 328 68.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.4e-123 446.8 329 69.9
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.4e-123 446.8 330 67.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.4e-123 446.8 330 67.9
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.2e-123 445.7 329 69.9
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 4.1e-123 445.3 329 69.0
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 4.1e-123 445.3 331 69.2
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.1e-123 445.3 330 67.6
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 4.1e-123 445.3 329 66.6
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.2e-123 444.1 329 69.6
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.2e-122 443.7 329 68.1
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.7e-122 442.6 329 69.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 3.5e-122 442.2 330 68.8
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 4.6e-122 441.8 331 68.9
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 6.0e-122 441.4 329 68.4
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.3e-121 440.3 293 74.7
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.3e-121 440.3 329 68.4
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.7e-121 439.9 329 67.8
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 3.9e-121 438.7 329 67.8
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.9e-121 438.7 328 67.1
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 5.0e-121 438.3 329 68.4
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.1e-120 437.2 329 65.3
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.5e-120 436.8 329 67.5
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.5e-120 436.8 400 59.8
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.5e-120 436.0 329 68.4
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 4.3e-120 435.3 329 67.5
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 5.6e-120 434.9 329 67.5
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 7.3e-120 434.5 328 66.5
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.6e-119 433.3 328 67.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.8e-119 432.6 328 66.5
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 4.7e-119 431.8 327 65.7
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.7e-119 431.8 328 67.4
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.1e-118 430.6 330 66.7
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.8e-118 429.9 327 65.7
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.8e-118 429.9 328 65.5
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 2.3e-118 429.5 327 66.4
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 3.1e-118 429.1 329 65.7
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 6.8e-118 427.9 323 66.3
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 8.9e-118 427.6 329 65.7
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 8.9e-118 427.6 328 65.2
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.5e-117 426.8 320 65.3
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.5e-117 426.8 328 65.5
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.0e-117 426.4 329 66.3
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 2.0e-117 426.4 328 64.9
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 2.0e-117 426.4 330 65.8
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 2.0e-117 426.4 363 62.5
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 5.8e-117 424.9 332 67.2
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.7e-116 423.3 330 65.5
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.2e-116 422.9 360 61.9
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 8.3e-116 421.0 328 65.2
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.1e-115 420.6 328 65.9
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 1.9e-115 419.9 327 65.1
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 4.1e-115 418.7 339 63.1
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 5.4e-115 418.3 328 64.9
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.2e-114 417.2 327 64.5
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 8.6e-113 411.0 276 73.9
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 2.5e-112 409.5 328 63.7
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.3e-112 408.7 318 65.4
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.3e-112 408.7 329 66.3
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 2.1e-111 406.4 328 62.5
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 2.8e-111 406.0 330 64.8
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 3.6e-111 405.6 328 62.8
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.6e-109 399.4 329 61.7
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 3.2e-107 392.5 326 61.7
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 4.6e-106 388.7 330 61.8
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.3e-105 387.1 329 61.7
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 6.6e-105 384.8 272 69.9
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.1e-104 384.0 329 60.2
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 4.4e-101 372.1 327 61.5
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.9e-100 368.6 328 59.5
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 8.7e-97 357.8 322 55.9
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 7.6e-93 344.7 318 57.5
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 6.4e-92 341.7 328 58.5
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 5.4e-91 338.6 328 57.0
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 6.0e-90 335.1 326 57.4
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.7e-89 333.6 323 57.6
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.1e-88 330.9 329 55.6
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.4e-83 313.9 325 54.8
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.4e-83 313.2 275 60.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.1e-82 310.1 326 50.0
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 4.3e-80 302.4 325 53.5
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.1e-71 273.5 326 46.0
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 2.0e-69 266.9 177 75.1
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 2.2e-68 263.5 199 66.8
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.9e-64 250.4 327 47.1
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 4.3e-64 249.2 186 68.8
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.8e-63 246.5 330 46.4
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 4.8e-63 245.7 276 47.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.4e-62 244.2 197 64.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 7.7e-61 238.4 269 50.2
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 3.9e-57 226.1 303 42.6
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 8.8e-57 224.9 183 62.3
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.5e-56 224.2 203 57.1
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 3.3e-48 196.4 133 70.7
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 9.7e-48 194.9 131 71.8
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.1e-46 191.4 158 62.0
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.4e-46 190.3 142 63.4
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.2e-45 188.0 131 71.0
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.6e-45 187.6 149 61.7
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 3.2e-43 179.9 272 40.8
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 5.5e-43 179.1 151 64.9
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.2e-42 177.9 294 36.7
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 3.1e-38 163.3 128 65.6
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.6e-37 161.0 114 70.2
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 7.7e-37 158.7 308 32.8
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.5e-35 153.7 181 47.0
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.2e-34 151.4 147 54.4
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.4e-33 147.9 139 54.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.4e-33 147.9 144 53.5
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.4e-32 143.3 196 41.3
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.7e-32 142.5 153 51.0
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 3.1e-30 136.7 98 67.3
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.9e-29 132.5 129 54.3
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.3e-28 131.3 82 72.0
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 3.8e-28 129.8 176 42.0
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.8e-25 120.9 126 46.8
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.4e-22 110.5 117 46.2
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 7.8e-21 105.5 196 38.8
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.9e-19 100.9 87 57.5
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.9e-19 100.9 87 57.5
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 5.6e-19 99.4 68 69.1
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.6e-18 97.8 87 56.3
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 5.7e-16 89.4 60 76.7
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 3.7e-15 86.7 123 43.9
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-11 75.1 62 58.1
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 3.3e-11 73.6 62 61.3
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 8.3e-07 58.9 42 64.3


User provided reference genes

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