Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1869.4 954 100.0
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1697.6 958 89.2
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1676.8 957 88.4
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1651.0 965 86.7
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1648.3 958 87.4
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1647.1 959 86.3
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1643.2 954 87.0
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1641.7 909 88.0
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1636.7 915 87.8
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1634.4 956 86.3
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1629.8 984 84.8
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1628.6 964 86.0
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1625.9 957 85.2
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1625.5 954 85.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1625.1 961 86.2
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1624.8 960 86.2
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1623.2 958 84.9
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1623.2 960 84.6
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1622.4 958 84.8
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1622.4 958 85.8
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1619.8 956 85.5
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1618.6 958 84.6
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1617.8 963 86.0
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1617.1 956 84.5
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1616.7 958 85.1
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1615.5 957 84.4
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1612.0 954 84.6
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1610.5 957 82.7
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1609.7 960 85.1
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1609.3 961 84.2
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1608.6 957 84.0
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1605.9 912 86.6
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1604.3 954 84.5
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1604.0 957 84.4
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1602.8 954 84.6
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1602.4 957 83.7
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1601.6 959 83.8
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1600.5 962 83.6
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1599.7 964 84.9
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1598.2 959 83.6
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1596.6 954 84.2
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1594.7 957 83.9
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1593.2 957 83.6
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1592.4 955 84.2
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1591.6 958 82.9
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1590.9 960 83.2
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1588.9 912 84.4
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1585.9 955 83.6
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1585.5 960 83.9
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1585.1 959 84.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1584.7 974 82.0
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1583.5 956 82.2
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1580.5 958 82.9
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1580.1 964 82.6
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1577.8 955 82.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1577.0 965 84.0
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1576.6 956 82.1
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1573.9 955 82.3
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1572.4 959 82.0
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1568.1 965 82.7
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1568.1 959 82.8
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1567.0 962 82.1
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1565.8 959 81.5
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1560.8 986 79.5
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1557.0 958 81.2
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1554.3 961 82.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 955 80.5
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1547.7 962 81.9
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1547.3 964 81.7
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1546.6 915 81.5
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1538.5 980 78.7
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1538.5 917 82.8
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1536.2 958 81.3
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1531.9 959 80.6
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 948 80.9
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 919 79.0
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 965 80.1
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1511.1 965 80.2
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1509.6 961 80.1
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1508.0 961 79.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1505.0 1182 67.9
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1503.0 969 78.4
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1500.0 980 79.1
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1498.0 920 81.0
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1496.9 954 79.7
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1494.2 984 78.8
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1494.2 984 78.8
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1493.0 967 79.4
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1491.1 966 78.8
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1489.9 955 79.1
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1484.9 971 78.2
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1482.2 975 78.4
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1478.8 959 78.6
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1474.1 978 77.4
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1474.1 908 81.6
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1471.4 829 85.6
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 958 77.8
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1463.4 958 76.7
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1456.4 843 83.3
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 954 74.5
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1434.5 965 76.7
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1432.5 953 74.7
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1417.1 964 72.0
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1411.7 953 72.2
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1399.4 919 75.0
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1396.3 917 75.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1371.7 930 73.9
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1365.5 908 72.2
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1354.0 956 71.0
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1344.3 784 84.7
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1328.5 786 82.7
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1275.8 726 85.1
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1238.8 924 65.2
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1221.8 784 74.1
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1221.5 940 65.3
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1211.8 687 86.3
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1154.4 952 63.4
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1151.3 990 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1132.1 980 58.1
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1127.5 723 80.5
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1117.1 962 59.4
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 7.9e-300 1033.9 660 78.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 8.5e-286 987.3 784 60.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.1e-284 982.6 673 76.2
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 3.9e-275 951.8 590 80.7
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.2e-262 909.4 561 79.9
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.0e-250 869.8 524 83.2
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 9.8e-242 840.9 599 73.3
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.0e-230 802.7 498 78.9
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 2.4e-219 766.5 441 88.7
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.2e-192 676.0 386 84.7
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.1e-187 659.8 403 83.6
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 4.2e-176 622.9 1040 37.9
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 1.2e-151 541.6 413 64.9
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 8.8e-150 535.4 415 63.4
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 4.4e-141 506.5 820 37.8
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.5e-128 464.2 483 55.1
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 8.6e-121 439.1 253 82.6
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 3.6e-119 433.7 223 91.0
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 3.6e-111 407.1 1052 27.9
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 9.2e-107 392.5 279 69.5
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.6e-105 386.3 880 32.0
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.4e-99 368.6 249 73.1
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 6.9e-94 349.7 253 67.6
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 6.9e-94 349.7 253 67.6
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 2.4e-91 341.3 365 46.8
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 3.4e-85 320.9 286 59.4
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.2e-61 242.7 148 75.7
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.2e-52 211.8 169 53.8
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.7e-50 204.1 239 50.6
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 3.9e-49 201.1 149 61.7
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 3.9e-49 201.1 149 61.7
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.8e-46 192.2 139 63.3
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.6e-45 188.3 172 54.7
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.5e-45 188.0 118 73.7
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 7.7e-45 186.8 103 86.4
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 3.3e-40 171.4 99 83.8
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 2.8e-39 168.3 141 52.5
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 4.1e-38 164.5 111 73.0
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 1.0e-36 159.8 131 63.4
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.6e-34 152.5 76 88.2
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.7e-34 151.8 76 88.2
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.7e-34 151.0 76 86.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.1e-34 150.6 75 89.3
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 6.1e-34 150.6 106 72.6
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.0e-33 149.8 88 83.0
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.4e-32 144.4 78 82.1
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.7e-32 144.1 74 86.5
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 6.3e-31 140.6 138 53.6
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 1.8e-30 139.0 120 59.2
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.6e-29 136.0 78 83.3
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.0e-29 135.6 110 59.1
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.1e-27 129.8 124 52.4
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.8e-25 122.5 65 87.7
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.4e-22 112.8 130 50.8
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 2.8e-18 98.6 294 26.5
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 3.4e-16 91.7 82 58.5
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 5.7e-16 90.9 56 78.6
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 3.5e-13 81.6 131 42.0
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.4e-09 69.7 46 60.9
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 1.8e-09 69.3 75 48.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 3.4e-08 65.1 189 29.1
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 2.9e-07 62.0 42 64.3


User provided reference genes

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