Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 2176.0 1174 100.0
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1857.4 1259 81.9
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1799.6 1197 82.0
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1781.9 1198 81.3
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1768.8 1201 80.9
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1744.9 1198 80.6
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1739.5 1198 80.1
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1738.0 1198 80.2
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1738.0 1196 80.0
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1731.8 1203 79.0
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1729.9 1198 80.4
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1727.6 1202 78.7
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1727.6 1198 80.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1727.6 1200 78.3
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1726.8 1198 80.1
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1722.2 1200 80.0
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1719.5 1197 78.2
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1713.4 1207 79.0
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1713.0 1195 79.3
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1700.6 1203 78.7
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1699.1 1186 79.1
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1696.4 1207 78.2
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1695.2 1202 76.8
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1694.9 1206 78.6
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1694.9 1199 77.3
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1690.6 1198 77.5
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1689.1 1251 75.9
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1688.3 1204 77.8
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1687.5 1205 78.3
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1685.6 1200 77.2
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1684.8 1198 78.1
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1676.8 1198 78.6
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1673.7 1211 76.5
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1669.4 1201 76.4
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1667.9 1201 77.4
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1666.7 1212 75.4
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1665.6 1157 78.7
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1653.6 1183 77.2
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1650.2 1200 76.5
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1645.9 1215 76.1
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1645.6 1204 75.7
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1645.2 1207 73.8
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1643.6 1201 76.7
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1639.8 1198 76.2
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1637.5 1196 76.8
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1636.3 1206 74.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1635.9 1210 73.2
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1635.2 1221 75.8
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1634.0 1140 79.9
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1632.8 1207 74.6
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1213 74.6
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1199 75.9
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1624.8 1196 75.7
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1615.5 1229 74.4
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1597.8 1203 74.6
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1597.4 1185 73.1
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1594.7 1207 74.6
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1587.0 1205 72.8
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1583.5 1199 73.4
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1583.2 1198 72.6
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1583.2 1175 75.5
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1580.5 1230 71.6
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1578.5 1170 75.2
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1570.4 1226 72.2
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1568.9 1202 72.2
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1566.6 1067 81.3
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1565.8 1187 74.1
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1564.3 1188 73.0
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1559.7 1401 66.3
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1555.4 1165 73.8
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1555.0 1121 76.4
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1552.3 1199 73.9
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1549.6 1198 70.1
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1549.6 1198 70.1
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1546.2 1198 71.8
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1546.2 1200 70.6
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1543.5 1197 70.4
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1540.4 1178 72.8
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1537.3 1200 71.0
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1531.2 1194 70.5
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1524.2 1196 70.1
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1521.9 1184 72.0
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1521.9 1211 70.8
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1518.4 1198 69.9
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1514.2 1304 66.9
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1513.8 1171 72.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1506.5 1205 70.3
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1505.3 1200 70.2
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1504.2 1211 69.9
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1501.9 1203 70.2
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1498.4 1207 69.8
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1453.3 1199 69.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1425.6 1187 69.6
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1417.9 1186 66.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1410.2 1195 65.4
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1402.1 1174 66.9
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1383.2 930 80.8
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1375.9 879 81.6
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1369.4 1257 63.4
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1332.8 1210 64.4
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1324.3 1200 63.3
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1323.9 873 80.9
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1303.1 1172 64.0
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1191.4 814 79.6
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1158.3 840 74.2
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1100.5 760 79.1
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1095.5 1233 52.7
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1087.4 889 72.6
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 1.5e-308 1063.1 797 71.1
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 4.1e-290 1001.9 967 62.5
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.1e-282 977.2 668 77.5
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.6e-280 967.6 802 69.1
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.5e-273 945.7 928 63.4
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.9e-211 739.2 607 67.7
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.8e-198 696.8 531 69.1
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-170 605.1 476 71.2
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 3.6e-161 573.5 961 39.4
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 7.0e-157 559.3 294 92.9
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 7.0e-149 532.7 377 75.6
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 4.3e-146 523.5 444 68.0
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 8.6e-131 472.6 371 73.6
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 5.1e-123 446.8 374 70.1
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.9e-122 444.9 827 39.5
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 9.9e-119 432.6 237 87.8
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.6e-116 425.2 1153 31.5
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 1.2e-100 372.5 555 44.1
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.3e-96 357.1 313 63.9
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 1.4e-88 332.4 212 78.3
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 4.5e-87 327.4 181 86.7
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 4.5e-87 327.4 181 86.7
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 5.0e-86 323.9 174 89.7
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 6.7e-83 313.5 1278 26.8
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 5.5e-77 293.9 381 55.4
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 2.7e-76 291.6 339 55.8
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.3e-74 284.6 215 70.2
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.3e-74 284.6 215 70.2
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 5.2e-67 260.8 388 45.1
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 1.7e-65 255.8 177 75.1
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.1e-64 253.1 358 52.2
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 6.5e-62 243.8 331 49.8
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.8e-59 235.7 137 86.9
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.3e-59 235.3 195 73.3
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-57 229.6 164 73.2
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 1.7e-54 219.2 252 56.7
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.7e-54 219.2 154 75.3
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 4.2e-53 214.5 318 41.8
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 5.5e-53 214.2 320 43.4
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.2e-41 175.6 101 92.1
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.1e-37 163.3 96 82.3
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 9.5e-37 160.2 138 63.0
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.0e-34 152.5 142 62.0
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 2.0e-34 152.5 222 45.0
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.7e-33 149.4 210 48.6
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.9e-32 146.0 98 73.5
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.6e-31 142.9 77 88.3
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 5.0e-30 137.9 100 68.0
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 3.3e-29 135.2 123 63.4
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 1.8e-27 129.4 117 66.7
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.3e-25 123.2 87 69.0
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.2e-24 118.6 73 79.5
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 5.4e-24 117.9 153 45.1
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 5.1e-22 111.3 65 87.7
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 8.6e-22 110.5 111 57.7
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 3.3e-21 108.6 71 80.3
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 3.6e-20 105.1 397 32.2
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 6.8e-19 100.9 97 63.9
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 2.0e-18 99.4 59 83.1
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 3.4e-18 98.6 69 66.7
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 9.9e-18 97.1 57 77.2
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 1.7e-17 96.3 57 75.4
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-17 95.9 77 62.3
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.9e-16 92.8 119 50.4
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 2.8e-12 79.0 56 66.1
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.4e-11 76.6 89 49.4
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 2.2e-09 69.3 163 35.6
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 7.1e-08 64.3 94 44.7
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 9.3e-08 63.9 42 69.0
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 2.1e-07 62.8 53 58.5
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 7.8e-07 60.8 39 66.7
Hma1.2p1_0786F.1_g217640 Hydrangea macrophylla HOM05D003924 ORTHO05D228318 5.1e-06 58.2 50 58.0


User provided reference genes

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