Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 1.3e-245 852.8 514 100.0
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.4e-234 816.2 512 95.7
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.2e-233 813.1 512 94.7
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.5e-233 812.8 512 94.1
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.6e-233 812.0 512 94.7
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 3.4e-233 811.6 512 94.3
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 4.5e-233 811.2 512 94.7
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.9e-232 808.5 512 89.6
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 4.2e-231 804.7 511 94.7
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.6e-230 801.6 512 93.6
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 6.7e-229 797.3 512 93.8
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 2.0e-228 795.8 512 91.2
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 9.7e-228 793.5 512 92.6
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 2.2e-227 792.3 512 93.4
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 6.3e-227 790.8 509 91.9
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 6.3e-227 790.8 511 92.0
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 6.3e-227 790.8 512 90.4
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.4e-226 789.6 512 91.8
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 1.4e-226 789.6 512 92.0
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.8e-226 789.3 512 90.2
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 2.4e-226 788.9 512 92.4
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 4.1e-226 788.1 512 92.0
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 4.1e-226 788.1 511 89.4
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 9.1e-226 786.9 511 88.6
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 2.0e-225 785.8 512 87.1
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.6e-225 785.4 512 92.8
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 3.4e-225 785.0 512 92.6
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 5.9e-225 784.3 512 91.6
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 5.9e-225 784.3 511 91.8
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 7.7e-225 783.9 512 92.6
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 7.7e-225 783.9 512 90.4
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.7e-224 782.7 511 87.9
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 2.9e-224 781.9 511 90.0
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 5.0e-224 781.2 509 87.8
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 5.0e-224 781.2 511 89.8
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 6.5e-224 780.8 511 90.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 6.5e-224 780.8 511 89.8
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 8.5e-224 780.4 509 92.7
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.1e-223 780.0 512 90.4
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.4e-223 779.6 512 91.4
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 2.5e-223 778.9 510 90.8
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 3.2e-223 778.5 511 91.4
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 3.2e-223 778.5 511 91.4
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 3.2e-223 778.5 512 91.0
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 5.5e-223 777.7 510 90.8
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 9.4e-223 776.9 511 91.0
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.2e-222 776.5 512 90.2
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 2.1e-222 775.8 512 90.4
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 7.9e-222 773.9 511 90.8
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 7.9e-222 773.9 502 91.8
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.4e-221 773.1 509 91.2
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 3.0e-221 771.9 512 88.7
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 3.9e-221 771.5 507 86.0
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 6.7e-221 770.8 512 86.3
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.1e-220 770.0 509 91.2
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.5e-220 769.6 512 84.2
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 5.7e-220 767.7 525 79.4
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 9.7e-220 766.9 512 90.8
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 9.7e-220 766.9 512 89.1
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.3e-219 766.5 502 90.6
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 4.8e-219 764.6 502 90.6
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 6.3e-219 764.2 510 90.2
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 8.2e-219 763.8 502 89.2
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.1e-218 763.5 512 87.9
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 3.1e-218 761.9 511 87.5
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 4.1e-218 761.5 509 90.4
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 1.5e-217 759.6 505 90.1
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 3.5e-217 758.4 510 87.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 5.9e-217 757.7 512 84.6
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.7e-216 756.1 510 84.1
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 6.5e-216 754.2 509 90.4
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 8.5e-216 753.8 512 84.2
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 2.5e-215 752.3 536 82.3
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 7.2e-215 750.7 512 88.9
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 1.6e-214 749.6 514 87.4
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 4.7e-214 748.0 510 82.2
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.4e-213 746.5 510 82.9
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.4e-213 746.5 512 83.2
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.4e-213 746.5 512 83.2
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 6.7e-213 744.2 512 88.7
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 6.7e-213 744.2 510 85.3
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 2.0e-212 742.7 512 86.3
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.1e-210 736.9 512 85.0
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-210 736.9 512 85.0
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 5.3e-210 734.6 510 84.9
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.6e-209 733.0 540 79.1
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.0e-208 730.3 510 84.5
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.7e-208 729.6 512 77.3
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.9e-208 728.8 509 88.0
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 3.8e-208 728.4 498 85.3
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 8.5e-208 727.2 485 89.7
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.7e-206 721.5 512 81.8
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.0e-204 716.1 464 96.3
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 9.7e-204 713.8 512 81.4
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 6.3e-203 711.1 555 78.4
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.4e-202 709.1 512 82.6
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 3.1e-202 708.8 510 84.7
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 3.5e-201 705.3 518 81.9
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 1.5e-199 699.9 533 79.9
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.4e-197 693.3 512 74.4
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 3.4e-196 688.7 549 71.0
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 7.5e-196 687.6 482 86.7
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 1.7e-195 686.4 512 80.7
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 4.1e-194 681.8 523 81.1
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.3e-192 676.8 468 89.1
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 6.6e-192 674.5 510 73.5
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.3e-187 660.2 511 82.6
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.4e-181 640.2 433 88.0
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 4.1e-178 628.6 428 91.8
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.0e-176 622.5 430 88.6
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.9e-163 579.3 414 88.4
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 5.2e-157 558.5 510 70.2
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.2e-153 547.4 513 66.9
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 4.5e-140 502.3 269 91.1
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 2.6e-132 476.5 254 93.3
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.2e-126 455.3 320 86.2
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 5.0e-123 445.7 312 80.1
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.2e-113 414.5 385 60.3
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 1.9e-106 390.6 210 94.3
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 4.2e-106 389.4 210 93.8
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 6.3e-94 349.0 365 75.1
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.1e-77 293.1 255 80.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 2.7e-76 290.4 520 50.0
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 8.0e-65 252.3 173 83.2
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 1.2e-63 248.4 134 94.8
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.9e-61 241.1 525 35.2
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 5.8e-47 193.0 99 87.9
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 3.9e-43 180.3 318 45.3
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 6.2e-41 172.9 84 90.5
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 4.2e-37 160.2 80 92.5
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.5e-34 151.8 80 93.8
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 6.2e-33 146.4 174 53.4
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 4.0e-32 143.7 137 61.3
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 5.3e-32 143.3 107 71.0
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.1e-29 135.6 295 31.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-27 128.6 70 87.1
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 9.6e-26 122.5 69 84.1
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 1.1e-24 119.0 64 84.4
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-24 119.0 64 84.4
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.7e-20 104.4 56 83.9
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 7.9e-20 102.8 51 86.3
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 5.6e-18 96.7 56 73.2
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 2.8e-17 94.4 74 62.2
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 2.8e-17 94.4 74 62.2
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.4e-16 92.0 45 88.9
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.3e-16 90.1 47 95.7
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 2.6e-15 87.8 45 84.4
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.2e-14 84.7 127 40.9
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 3.5e-12 77.4 134 74.6
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 7.9e-12 76.3 103 44.7
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 3.9e-11 73.9 36 86.1
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 2.6e-07 61.2 61 54.1
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 7.6e-07 59.7 35 74.3
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 5.0e-06 57.0 74 51.4


User provided reference genes

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