Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01648 Aquilegia oxysepala HOM05D000113 ORTHO05D014827 1.0e-48 196.4 102 100.0
Aqoxy1G00504 Aquilegia oxysepala HOM05D000113 ORTHO05D004634 1.6e-36 156.0 82 97.6
Nn4g22369 Nelumbo nucifera HOM05D000113 ORTHO05D004634 3.6e-33 144.8 82 89.0
PSO017G2450 Papaver somniferum HOM05D000113 ORTHO05D004634 3.6e-33 144.8 82 89.0
CDE07G1738 Ceratophyllum demersum HOM05D000113 ORTHO05D004634 2.3e-32 142.1 82 86.6
PSO478G4217 Papaver somniferum HOM05D000113 ORTHO05D004634 5.2e-32 141.0 82 84.1
Oeu019036.1 Olea europaea HOM05D000113 ORTHO05D004634 6.8e-32 140.6 82 89.0
TAR622G0398 Trochodendron aralioides HOM05D000113 ORTHO05D004634 6.8e-32 140.6 82 90.2
Potri.010G172500 Populus trichocarpa HOM05D000113 ORTHO05D004634 8.8e-32 140.2 82 87.8
HPP92_020092 Vanilla planifolia HOM05D000113 ORTHO05D004634 1.2e-31 139.8 82 84.1
Dinv27008 Davidia involucrata HOM05D000113 ORTHO05D004634 1.5e-31 139.4 82 87.8
CSS0001396 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D004634 2.0e-31 139.0 82 87.8
CiPaw.05G112500 Carya illinoinensis HOM05D000113 ORTHO05D004634 2.0e-31 139.0 82 86.6
Dinv16087 Davidia involucrata HOM05D000113 ORTHO05D004634 2.0e-31 139.0 82 87.8
PGR044G0800 Punica granatum HOM05D000113 ORTHO05D004634 2.0e-31 139.0 82 85.4
Actinidia30661 Actinidia chinensis HOM05D000113 ORTHO05D004634 2.6e-31 138.7 82 87.8
Eucgr.H04653 Eucalyptus grandis HOM05D000113 ORTHO05D004634 2.6e-31 138.7 82 86.6
Psat0s698g0040 Pisum sativum HOM05D000113 ORTHO05D004634 2.6e-31 138.7 82 86.6
PGR119G0528 Punica granatum HOM05D000113 ORTHO05D004634 2.6e-31 138.7 82 85.4
Lj8C80G9 Lonicera japonica HOM05D000113 ORTHO05D004634 3.4e-31 138.3 82 85.4
RcHm_v2.0_Chr4g0430661 Rosa chinensis HOM05D000113 ORTHO05D004634 3.4e-31 138.3 82 85.4
MELO3C015733.2 Cucumis melo HOM05D000113 ORTHO05D004634 4.4e-31 137.9 82 86.6
CsaV3_7G027360 Cucumis sativus L. HOM05D000113 ORTHO05D004634 4.4e-31 137.9 82 86.6
Cc09_g10090 Coffea canephora HOM05D000113 ORTHO05D004634 5.7e-31 137.5 82 85.4
Ca_01274_v3 Cicer arietinum L. HOM05D000113 ORTHO05D004634 7.5e-31 137.1 82 85.4
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 7.5e-31 137.1 82 85.4
Lsat_1_v5_gn_4_3040 Lactuca sativa HOM05D000113 ORTHO05D004634 7.5e-31 137.1 82 86.6
DCAR_030388 Daucus carota HOM05D000113 ORTHO05D004634 9.8e-31 136.7 82 85.4
Glyma.13G342400 Glycine max HOM05D000113 ORTHO05D004634 9.8e-31 136.7 82 85.4
Glyma.15G031900 Glycine max HOM05D000113 ORTHO05D004634 1.7e-30 136.0 82 84.1
TPR.G145 Trifolium pratense HOM05D000113 ORTHO05D004634 1.7e-30 136.0 82 85.4
Phvul.L011643 Phaseolus vulgaris HOM05D000113 ORTHO05D004634 2.2e-30 135.6 82 80.5
QL03p054215 Quercus lobata HOM05D000113 ORTHO05D004634 2.2e-30 135.6 82 84.1
Sed0009802 Sechium edule HOM05D000113 ORTHO05D004634 2.8e-30 135.2 82 84.1
FAN17G0033 Fragaria x ananassa HOM05D000113 ORTHO05D004634 3.7e-30 134.8 82 82.9
FAN22G0844 Fragaria x ananassa HOM05D000113 ORTHO05D004634 3.7e-30 134.8 82 82.9
Medtr2g098440 Medicago truncatula HOM05D000113 ORTHO05D004634 3.7e-30 134.8 82 84.1
Phvul.004G165266 Phaseolus vulgaris HOM05D000113 ORTHO05D004634 3.7e-30 134.8 82 82.9
Sabra10G0131700 Salix brachista HOM05D000113 ORTHO05D004634 3.7e-30 134.8 82 84.1
VMungo1080G1368 Vigna mungo HOM05D000113 ORTHO05D004634 3.7e-30 134.8 82 82.9
THA.LOC104820521 Tarenaya hassleriana HOM05D000113 ORTHO05D004634 4.8e-30 134.4 82 81.7
MSTRG.13314 Avicennia marina HOM05D000113 ORTHO05D004634 6.3e-30 134.0 82 81.7
Migut.E00026 Erythranthe guttata HOM05D000113 ORTHO05D004634 6.3e-30 134.0 82 85.4
MD16G1117100 Malus domestica HOM05D000113 ORTHO05D004634 6.3e-30 134.0 82 84.1
SGA_v2.0_scaffold1G00333 Striga asiatica HOM05D000113 ORTHO05D004634 6.3e-30 134.0 82 85.4
SGA_v2.0_scaffold87G27143 Striga asiatica HOM05D000113 ORTHO05D004634 6.3e-30 134.0 82 85.4
ATR0605G003 Amborella trichopoda HOM05D000113 ORTHO05D004634 8.3e-30 133.7 82 82.9
CANSAT80G2661 Cannabis sativa HOM05D000113 ORTHO05D004634 1.1e-29 133.3 82 82.9
HanXRQChr15g0464301 Helianthus annuus HOM05D000113 ORTHO05D004634 1.1e-29 133.3 82 82.9
Hund14457 Selenicereus undatus HOM05D000113 ORTHO05D004634 1.1e-29 133.3 82 84.1
Lalb_Chr14g0372271 Lupinus albus HOM05D000113 ORTHO05D004634 1.4e-29 132.9 82 81.7
Os07g0508000 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D004634 1.8e-29 132.5 82 78.0
Prupe.1G229100 Prunus persica HOM05D000113 ORTHO05D004634 1.8e-29 132.5 82 82.9
Thecc.07G168000 Theobroma cacao HOM05D000113 ORTHO05D004634 1.8e-29 132.5 82 81.7
Zm00001eb105730 Zea mays HOM05D000113 ORTHO05D004634 1.8e-29 132.5 82 76.8
Cpa.g.sc701.2 Carica papaya HOM05D000113 ORTHO05D004634 2.4e-29 132.1 82 81.7
FvH4_4g24000 Fragaria vesca HOM05D000113 ORTHO05D004634 2.4e-29 132.1 82 81.7
FAN12G3517 Fragaria x ananassa HOM05D000113 ORTHO05D004634 2.4e-29 132.1 82 81.7
HanXRQChr12g0385401 Helianthus annuus HOM05D000113 ORTHO05D004634 2.4e-29 132.1 82 81.7
Lj3g0026728 Lotus japonicus HOM05D000113 ORTHO05D004634 2.4e-29 132.1 82 80.5
SEGI_28213 Sequoiadendron giganteum HOM05D000113 ORTHO05D004634 2.4e-29 132.1 82 78.0
vmacro01072 Vaccinium macrocarpon HOM05D000113 ORTHO05D004634 2.4e-29 132.1 82 82.9
Aa31LG9G13310 Aethionema arabicum HOM05D000113 ORTHO05D004634 3.1e-29 131.7 82 82.9
Manes.16G136600 Manihot esculenta HOM05D000113 ORTHO05D004634 3.1e-29 131.7 82 80.5
EL10Ac9g21442 Beta vulgaris HOM05D000113 ORTHO05D004634 4.1e-29 131.3 82 81.7
MD10G1223900 Malus domestica HOM05D000113 ORTHO05D004634 4.1e-29 131.3 82 80.5
Peaxi162Scf00128g01138 Petunia axillaris HOM05D000113 ORTHO05D004634 4.1e-29 131.3 82 81.7
Sc06g0000370 Simmondsia chinensis HOM05D000113 ORTHO05D004634 4.1e-29 131.3 82 82.9
TWI18G0274 Tripterygium wilfordii HOM05D000113 ORTHO05D004634 4.1e-29 131.3 82 80.5
Ah.03g136280 Amaranthus hybridus HOM05D000113 ORTHO05D004634 5.4e-29 131.0 82 81.7
EL10Ac1g00166 Beta vulgaris HOM05D000113 ORTHO05D004634 5.4e-29 131.0 82 81.7
ECA234G1819 Erigeron canadensis HOM05D000113 ORTHO05D004634 5.4e-29 131.0 82 81.7
Rhsim12G0028300 Rhododendron simsii HOM05D000113 ORTHO05D004634 5.4e-29 131.0 82 82.9
RcHm_v2.0_Chr5g0022111 Rosa chinensis HOM05D000113 ORTHO05D004634 5.4e-29 131.0 82 81.7
Nitab4.5_0000148g0090 Nicotiana tabacum HOM05D000113 ORTHO05D004634 9.1e-29 130.2 82 80.5
Ciclev10030531m.g Citrus clementina HOM05D000113 ORTHO05D004634 1.6e-28 129.4 82 76.8
Thhalv10012468m.g Eutrema salsugineum HOM05D000113 ORTHO05D004634 2.0e-28 129.0 82 81.7
Gohir.A13G122700 Gossypium hirsutum HOM05D000113 ORTHO05D004634 2.0e-28 129.0 82 79.3
Gohir.D13G126800 Gossypium hirsutum HOM05D000113 ORTHO05D004634 2.0e-28 129.0 82 79.3
Gorai.013G141900 Gossypium raimondii HOM05D000113 ORTHO05D004634 2.0e-28 129.0 82 79.3
arahy.Tifrunner.gnm1.ann1.FVMK5B Arachis hypogaea HOM05D000113 ORTHO05D004634 2.7e-28 128.6 82 78.0
arahy.Tifrunner.gnm1.ann1.LX1KXR Arachis hypogaea HOM05D000113 ORTHO05D004634 2.7e-28 128.6 82 78.0
arahy.Tifrunner.gnm1.ann1.LY2VHI Arachis hypogaea HOM05D000113 ORTHO05D004634 2.7e-28 128.6 82 78.0
arahy.Tifrunner.gnm1.ann1.XJJ2Y4 Arachis hypogaea HOM05D000113 ORTHO05D004634 2.7e-28 128.6 82 78.0
Carub.0006s1118 Capsella rubella HOM05D000113 ORTHO05D004634 3.5e-28 128.3 82 80.5
CAN.G959.46 Capsicum annuum HOM05D000113 ORTHO05D004634 3.5e-28 128.3 82 79.3
FvH4_3g13400 Fragaria vesca HOM05D000113 ORTHO05D004634 3.5e-28 128.3 82 78.0
FAN21G1231 Fragaria x ananassa HOM05D000113 ORTHO05D004634 3.5e-28 128.3 82 78.0
FAN25G3356 Fragaria x ananassa HOM05D000113 ORTHO05D004634 3.5e-28 128.3 82 78.0
Solyc10g076910.2 Solanum lycopersicum HOM05D000113 ORTHO05D004634 3.5e-28 128.3 82 79.3
Sopen10g028600 Solanum pennellii HOM05D000113 ORTHO05D004634 3.5e-28 128.3 82 79.3
PGSC0003DMG400007192 Solanum tuberosum HOM05D000113 ORTHO05D004634 3.5e-28 128.3 82 79.3
A02p01640 Brassica napus HOM05D000113 ORTHO05D004634 4.5e-28 127.9 82 80.5
AUR62005595 Chenopodium quinoa HOM05D000113 ORTHO05D004634 4.5e-28 127.9 82 79.3
Duzib187G1430 Durio zibethinus HOM05D000113 ORTHO05D004634 4.5e-28 127.9 82 78.0
Thecc.08G194000 Theobroma cacao HOM05D000113 ORTHO05D004634 4.5e-28 127.9 82 76.8
BcaNung01180 Brassica carinata HOM05D000113 ORTHO05D004634 5.9e-28 127.5 82 79.3
CARHR200450 Cardamine hirsuta HOM05D000113 ORTHO05D004634 5.9e-28 127.5 82 80.5
Medtr3g054400 Medicago truncatula HOM05D000113 ORTHO05D004634 5.9e-28 127.5 82 79.3
SalBow8G3598 Salvia bowleyana HOM05D000113 ORTHO05D004634 7.7e-28 127.1 82 76.8
Sp6g30960 Schrenkiella parvula HOM05D000113 ORTHO05D004634 7.7e-28 127.1 82 79.3
C02p05850 Brassica napus HOM05D000113 ORTHO05D004634 1.0e-27 126.7 82 79.3
BolC2t06530H Brassica oleracea HOM05D000113 ORTHO05D004634 1.0e-27 126.7 82 79.3
BraA02t05143Z Brassica rapa HOM05D000113 ORTHO05D004634 1.0e-27 126.7 82 79.3
arahy.Tifrunner.gnm1.ann1.U4BLLZ Arachis hypogaea HOM05D000113 ORTHO05D004634 1.3e-27 126.3 82 76.8
AUR62024132 Chenopodium quinoa HOM05D000113 ORTHO05D004634 1.3e-27 126.3 82 78.0
AL6G23600 Arabidopsis lyrata HOM05D000113 ORTHO05D004634 2.3e-27 125.6 82 78.0
FAN11G3859 Fragaria x ananassa HOM05D000113 ORTHO05D004634 2.3e-27 125.6 82 76.8
Pp3c23_5290 Physcomitrium patens HOM05D000113 ORTHO05D004634 2.3e-27 125.6 82 75.6
AT5G13010 Arabidopsis thaliana HOM05D000113 ORTHO05D004634 2.9e-27 125.2 82 76.8
PSO478G4152 Papaver somniferum HOM05D000113 ORTHO05D004634 3.8e-27 124.8 82 73.2
FAN16G1467 Fragaria x ananassa HOM05D000113 ORTHO05D004634 5.0e-27 124.4 82 75.6
Haze_12387 Corylus avellana HOM05D000113 ORTHO05D004634 1.9e-26 122.5 82 79.3
Prupe.4G121400 Prunus persica HOM05D000113 ORTHO05D004634 4.2e-26 121.3 82 76.8
SHI21147 Sapria himalayana HOM05D000113 ORTHO05D004634 1.2e-25 119.8 82 74.4
BcaB04g20173 Brassica carinata HOM05D000113 ORTHO05D004634 1.6e-25 119.4 82 70.7
QL07p034890 Quercus lobata HOM05D000113 ORTHO05D004634 2.8e-25 118.6 82 73.2
Mapoly0074s0050 Marchantia polymorpha HOM05D000113 ORTHO05D004634 4.7e-25 117.9 82 74.4
unitig_744.g24418 Utricularia gibba HOM05D000113 ORTHO05D004634 8.0e-25 117.1 82 70.7
Lj6g0009222 Lotus japonicus HOM05D000113 ORTHO05D004634 8.9e-24 113.6 86 69.8
PGSC0003DMG400015422 Solanum tuberosum HOM05D000113 ORTHO05D004634 2.0e-23 112.5 82 70.7
Hund25450 Selenicereus undatus HOM05D000113 ORTHO05D014827 3.4e-23 111.7 82 72.0
CBR_g50319 Chara braunii HOM05D000113 ORTHO05D004634 4.4e-23 111.3 82 73.2
MBI07_g30977_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D004634 5.7e-23 110.9 61 93.4
Solyc12g089010.3 Solanum lycopersicum HOM05D000113 ORTHO05D004634 9.8e-23 110.2 82 68.3
Sopen12g030910 Solanum pennellii HOM05D000113 ORTHO05D004634 2.8e-22 108.6 82 67.1
Aqoxy61s008 Aquilegia oxysepala HOM05D000113 ORTHO05D014827 1.6e-20 102.8 54 98.1
CDE06G1139 Ceratophyllum demersum HOM05D000113 ORTHO05D004634 5.9e-20 100.9 57 87.7
Lj6g0023430 Lotus japonicus HOM05D000113 ORTHO05D004634 1.7e-19 99.4 81 63.0
Haze_04386 Corylus avellana HOM05D000113 ORTHO05D004634 8.6e-19 97.1 60 83.3
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.1e-18 96.7 82 65.9
Thhalv10012221m.g Eutrema salsugineum HOM05D000113 ORTHO05D004634 1.1e-18 96.7 82 64.6
Aqoxy7G03775 Aquilegia oxysepala HOM05D000113 ORTHO05D004634 1.9e-18 95.9 54 87.0
Lsat_1_v5_gn_3_4241 Lactuca sativa HOM05D003509 ORTHO05D014827 4.9e-14 81.3 55 81.8
Lsat_1_v5_gn_5_33061 Lactuca sativa HOM05D000113 ORTHO05D014827 1.8e-13 79.3 61 73.8
MCO14G058 Micromonas commoda HOM05D000113 ORTHO05D004634 5.4e-13 77.8 100 41.0
CSS0020206 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D004634 1.2e-12 76.6 82 54.9
Lsat_1_v5_gn_7_82301 Lactuca sativa HOM05D000113 ORTHO05D014827 2.0e-12 75.9 50 78.0
Cre24.g755347 Chlamydomonas reinhardtii HOM05D000113 ORTHO05D004634 1.6e-09 66.2 90 44.4
CAN.G1002.10 Capsicum annuum HOM05D000113 ORTHO05D014827 8.0e-09 63.9 62 54.8
Nn5g27901 Nelumbo nucifera HOM05D000113 ORTHO05D014827 1.2e-07 60.1 35 80.0
PRCOL_00001931 Prasinoderma coloniale HOM05D000113 ORTHO05D004634 4.4e-07 58.2 90 40.0


User provided reference genes

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