Gene: Solyc12g089010.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g089010.3
  • Transcript Identifier Solyc12g089010.3.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 63741819-63743855 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g089010.3.1
  • uniprot A0A3Q7JY12
  • gene_id Solyc12g089010

Descriptions

  • Description ATP-dependent RNA helicase (AHRD V3.3 *** A0A1Y1IA80_KLENI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IBA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR018647 Domain of unknown function DUF2075
IPR007502 Helicase-associated domain
IPR042035 DEAH helicase, winged-helix domain
Mapman id Description
16.2.7.1.6 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp16)