Gene: Sopen12g030910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g030910
  • Transcript Identifier Sopen12g030910.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 80035182-80037341 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g030910.1

Descriptions

  • Description embryo defective 3011 (EMB3011) | FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding | INVOLVED IN: embryo development ending in seed dormancy | LOCATED IN: cellular_component unknown | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Helicase-associated domain , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , Domain of unknown function DUF1605 , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
InterProhelicase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR007502 Helicase-associated domain
IPR001650 Helicase, C-terminal
IPR011709 Domain of unknown function DUF1605
Mapman id Description
16.2.7.1.6 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp16)