Gene: CSS0001396

General Information

Structural Information

  • Species Camellia sinensis var. sinensis
  • Gene Identifier CSS0001396
  • Transcript Identifier CSS0001396.1
  • Gene Type Coding gene
  • Location Chr6 : 5768968-5778811 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid CSS0001396.1

Descriptions

  • Description PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Vitis vinifera]
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT5G13010
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT5G13010
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G13010
GO:0033120
ISO
PLAZA Integrative Orthologypositive regulation of RNA splicing AT5G13010
GO:0010051
ISO
PLAZA Integrative Orthologyxylem and phloem pattern formation AT5G13010
GO:0048767
ISO
PLAZA Integrative Orthologyroot hair elongation AT5G13010
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT5G13010
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT5G13010
GO:0010467
ISO
PLAZA Integrative Orthologygene expression AT5G13010
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT5G13010
GO:0016246
ISO
PLAZA Integrative OrthologyRNA interference AT5G13010
GO:0031334
ISO
PLAZA Integrative Orthologypositive regulation of protein-containing complex assembly AT5G13010

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
InterProhelicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G13010

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR007502 Helicase-associated domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR011709 Domain of unknown function DUF1605
Mapman id Description
16.2.7.1.6 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp16)