Gene: AT5G13010

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G13010
  • Transcript Identifier AT5G13010.1
  • Gene Type Coding gene
  • Location Chr5 : 4122747-4128660 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G13010.1
  • symbol EMB3011
  • Alias CUV,CLUMSY VEIN,PRP16,homolog in yeast PRP16
  • full_name embryo defective 3011
  • uniprot F4K2E9

Descriptions

  • Description RNA helicase family protein
  • Computational description embryo defective 3011 (EMB3011); FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IMP
IBA
Gene OntologymRNA splicing, via spliceosome1 2
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0045087
IEA
GOA Databaseinnate immune response
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IMP
Gene OntologyRNA splicing2
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0002376
IEA
GOA Databaseimmune system process
GO:0033120
IMP
Gene Ontologypositive regulation of RNA splicing2
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy2
GO:0010051
IMP
Gene Ontologyxylem and phloem pattern formation2
GO:0010467
IMP
Gene Ontologygene expression2
GO:0048767
IGI
Gene Ontologyroot hair elongation2
GO:0016246
IMP
Gene OntologyRNA interference3
GO:0031053
IMP
Gene Ontologyprimary miRNA processing3
GO:0031334
IGI
Gene Ontologypositive regulation of protein-containing complex assembly3
GO:0050832
IMP
Gene Ontologydefense response to fungus3
GO:0048364
IMP
Gene Ontologyroot development4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003724
IEA
Gene OntologyRNA helicase activity
GO:0003723
IBA
Gene OntologyRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IBA
Gene Ontologyspliceosomal complex1
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0005622
IBA
Gene Ontologyintracellular anatomical structure1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007502 Helicase-associated domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
IPR011709 Domain of unknown function DUF1605
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.2.7.1.6 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp16)