Gene: ClCG09G007780
General Information
Structural Information
- Species Citrullus lanatus
- Gene Identifier ClCG09G007780
- Transcript Identifier ClCG09G007780.1
- Gene Type Coding gene
- Location CG_Chr09 : 7081210-7105245 : positive
Gene Family Information
- ID HOM05D000113
- #Genes/#Species 2932/100
- Phylogenetic origin
- ID ORTHO05D004634
- #Genes/#Species 175/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid ClCG09G007780.1
- name maker-CGscf_0001-snap-gene-7.427
- name maker-CGscf_0001-snap-gene-7.427-mRNA-1
Descriptions
- Description Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010051 | ISO | PLAZA Integrative Orthology | xylem and phloem pattern formation | AT5G13010 |
| GO:0031334 | ISO | PLAZA Integrative Orthology | positive regulation of protein-containing complex assembly | AT5G13010 |
| GO:0016246 | ISO | PLAZA Integrative Orthology | RNA interference | AT5G13010 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT5G13010 |
| GO:0010467 | ISO | PLAZA Integrative Orthology | gene expression | AT5G13010 |
| GO:0048364 | ISO | PLAZA Integrative Orthology | root development | AT5G13010 |
| GO:0000398 | ISO | PLAZA Integrative Orthology | mRNA splicing, via spliceosome | AT5G13010 |
| GO:0048767 | ISO | PLAZA Integrative Orthology | root hair elongation | AT5G13010 |
| GO:0033120 | ISO | PLAZA Integrative Orthology | positive regulation of RNA splicing | AT5G13010 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G13010 |
| GO:0031053 | ISO | PLAZA Integrative Orthology | primary miRNA processing | AT5G13010 |
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT5G13010 |
| GO:0016573 | IEA | InterPro | histone acetylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G13010 |
| GO:0000123 | IEA | InterPro | histone acetyltransferase complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR007502 | Helicase-associated domain |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR015418 | Chromatin modification-related protein Eaf6 |
| IPR011709 | Domain of unknown function DUF1605 |
| Mapman id | Description |
|---|---|
| 12.3.1.1.1.2 | Chromatin organisation.post-translational histone modification.histone acetylation.NuA4 histone acetyltransferase complex.Piccolo module.component EAF6 |
| 16.2.7.1.6 | RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp16) |