Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 6.7e-246 853.6 436 100.0
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 2.7e-186 655.6 439 77.2
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.9e-184 649.4 447 73.4
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 2.0e-173 612.8 443 72.9
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.2e-172 609.4 445 69.9
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.9e-171 606.3 453 70.0
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 2.4e-171 605.9 449 71.3
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 3.9e-169 598.6 451 70.7
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.1e-168 597.0 424 73.6
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 2.5e-168 595.9 446 68.8
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.3e-168 595.1 447 69.1
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.6e-167 593.2 447 68.7
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 2.8e-167 592.4 452 68.1
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.8e-167 592.4 450 70.0
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 8.1e-167 590.9 446 68.2
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.0e-166 588.6 442 68.8
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 5.8e-165 584.7 450 68.4
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 5.8e-165 584.7 441 66.9
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 2.2e-164 582.8 447 67.8
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 5.4e-163 578.2 452 67.5
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 9.2e-163 577.4 444 67.3
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.2e-162 577.0 451 67.0
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.6e-162 576.6 456 66.9
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.6e-162 576.6 427 71.0
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.7e-162 575.9 454 66.7
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 4.6e-162 575.1 447 67.8
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 4.6e-162 575.1 436 67.4
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.0e-161 573.9 455 66.2
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.7e-161 573.2 447 67.6
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.3e-161 572.8 458 66.2
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.9e-161 572.0 455 65.9
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.5e-160 570.1 443 68.2
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 1.9e-160 569.7 436 67.0
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.5e-160 569.3 455 65.5
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 5.6e-160 568.2 422 69.9
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 3.6e-159 565.5 445 67.2
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 8.1e-159 564.3 439 66.3
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.1e-158 563.9 454 65.4
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 1.4e-158 563.5 501 62.5
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.4e-158 563.5 448 65.6
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.4e-158 562.8 454 65.2
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 6.9e-158 561.2 448 66.7
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 9.0e-158 560.8 454 65.0
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.5e-157 560.1 440 66.1
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 2.0e-157 559.7 440 66.1
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 2.6e-157 559.3 468 63.7
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 2.6e-157 559.3 468 63.7
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.4e-157 558.9 461 64.9
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 4.4e-157 558.5 446 65.2
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 5.8e-157 558.1 450 65.1
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.2e-156 556.2 439 66.7
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 3.8e-156 555.4 439 66.3
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 6.4e-156 554.7 448 66.3
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 6.4e-156 554.7 445 64.9
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 6.4e-156 554.7 434 69.4
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 8.4e-156 554.3 458 65.1
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.4e-155 553.5 448 65.4
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 1.4e-155 553.5 452 64.2
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 5.4e-155 551.6 449 66.6
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 9.3e-155 550.8 440 65.2
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 6.0e-154 548.1 441 65.8
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 1.1e-152 543.9 429 67.8
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.6e-151 540.0 442 64.5
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 6.2e-151 538.1 454 63.0
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 5.3e-150 535.0 450 63.1
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 3.4e-149 532.3 404 70.3
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.2e-147 525.8 439 63.3
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 9.3e-147 524.2 404 66.8
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 3.7e-143 512.3 434 62.2
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.4e-142 510.4 441 61.5
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 4.0e-142 508.8 441 62.1
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 4.0e-142 508.8 436 63.3
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 5.3e-142 508.4 439 62.2
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 5.3e-142 508.4 438 61.6
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 3.4e-141 505.8 444 60.6
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 2.9e-140 502.7 441 61.0
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 2.9e-140 502.7 441 61.5
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 4.9e-140 501.9 437 60.6
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.9e-140 501.9 437 61.8
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.5e-139 499.6 411 65.7
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 2.5e-139 499.6 450 61.1
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 5.5e-139 498.4 441 61.0
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 5.5e-139 498.4 525 53.9
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 2.1e-138 496.5 441 60.1
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 3.0e-137 492.7 438 60.3
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 8.7e-137 491.1 456 56.8
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 3.3e-136 489.2 438 60.5
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 7.4e-136 488.0 432 62.3
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 2.1e-135 486.5 452 58.4
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 4.8e-135 485.3 438 60.3
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 2.6e-133 479.6 445 58.7
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 9.3e-131 471.1 459 58.8
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 3.9e-129 465.7 353 68.6
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.5e-128 463.8 436 59.6
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 7.4e-128 461.5 354 71.2
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.4e-126 456.4 429 58.7
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 2.2e-124 449.9 419 59.9
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 6.1e-122 441.8 265 82.3
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.5e-120 436.4 277 80.5
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.4e-118 429.9 252 83.7
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 2.4e-118 429.9 326 67.8
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.8e-116 422.5 435 51.3
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 3.2e-115 419.5 430 54.2
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.1e-112 411.0 414 54.6
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.5e-112 410.6 253 79.1
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 2.6e-109 399.8 458 52.2
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 9.4e-107 391.3 424 54.0
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.2e-101 374.4 228 81.6
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.7e-100 370.5 413 50.8
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 2.5e-91 340.1 483 43.1
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 5.5e-83 312.4 365 50.4
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.0e-81 308.1 320 54.4
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 2.3e-81 307.0 284 63.4
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 4.9e-79 299.3 282 59.6
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 5.9e-77 292.4 261 60.2
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 9.5e-75 285.0 285 60.0
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 1.0e-73 281.6 320 51.6
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.2e-69 268.1 276 53.6
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.5e-64 251.1 402 41.5
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 9.2e-62 241.9 210 62.4
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 6.0e-61 239.2 248 55.6
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 5.2e-57 226.1 428 35.0
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 2.6e-56 223.8 210 60.0
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.1e-51 208.4 277 43.0
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 8.9e-49 198.7 136 67.6
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.2e-45 188.3 254 42.5
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 9.3e-38 162.2 199 49.2
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.7e-37 160.6 86 86.0
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.6e-37 159.8 106 78.3
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 6.0e-37 159.5 182 48.9
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 8.7e-36 155.6 98 83.7
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 4.5e-32 143.3 91 73.6
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 4.9e-31 139.8 74 86.5
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.6e-29 133.3 87 70.1
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.3e-28 131.7 85 76.5
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.9e-27 127.9 329 29.2
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 4.5e-24 116.7 187 41.7
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 3.9e-20 103.6 67 74.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 1.3e-18 98.6 69 75.4
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.8e-17 94.7 187 36.4
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.3e-15 88.6 63 71.4
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 1.1e-14 85.5 95 48.4
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 1.9e-14 84.7 81 60.5
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.9e-13 79.3 59 64.4
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 8.5e-07 59.3 36 77.8
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.4e-06 58.5 44 61.4
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 9.4e-06 55.8 60 48.3


User provided reference genes

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