Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044150 Amaranthus hybridus HOM05D005089 ORTHO05D006232 1.6e-83 312.8 164 100.0
EL10Ac1g01451 Beta vulgaris HOM05D005089 ORTHO05D006232 1.1e-15 87.4 70 67.1
EL10Ac4g08873 Beta vulgaris HOM05D005089 ORTHO05D006232 3.2e-15 85.9 53 81.1
AUR62005504 Chenopodium quinoa HOM05D005089 ORTHO05D006232 3.2e-15 85.9 53 81.1
AUR62013820 Chenopodium quinoa HOM05D005089 ORTHO05D006232 3.2e-15 85.9 53 81.1
Hund21682 Selenicereus undatus HOM05D005089 ORTHO05D006232 4.2e-15 85.5 51 84.3
Thhalv10019364m.g Eutrema salsugineum HOM05D005089 ORTHO05D006232 7.1e-15 84.7 53 77.4
FAN10G3957 Fragaria x ananassa HOM05D005089 ORTHO05D006232 7.1e-15 84.7 53 79.2
Hma1.2p1_0034F.1_g021510 Hydrangea macrophylla HOM05D005089 ORTHO05D006232 1.2e-14 84.0 53 77.4
Carub.0002s1152 Capsella rubella HOM05D005089 ORTHO05D006232 1.6e-14 83.6 53 75.5
CARHR057510 Cardamine hirsuta HOM05D005089 ORTHO05D006232 1.6e-14 83.6 53 77.4
Lj5g0003197 Lotus japonicus HOM05D005089 ORTHO05D006232 1.6e-14 83.6 53 77.4
BcaC03g14718 Brassica carinata HOM05D005089 ORTHO05D006232 2.1e-14 83.2 53 75.5
A02p13340 Brassica napus HOM05D005089 ORTHO05D006232 2.1e-14 83.2 53 75.5
C02p21600 Brassica napus HOM05D005089 ORTHO05D006232 2.1e-14 83.2 53 75.5
BraA02t06391Z Brassica rapa HOM05D005089 ORTHO05D006232 2.1e-14 83.2 53 75.5
TPR.G35417 Trifolium pratense HOM05D005089 ORTHO05D006232 2.7e-14 82.8 53 75.5
Ca_25486_v3 Cicer arietinum L. HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
FvH4_7g03730 Fragaria vesca HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
FAN01G1873 Fragaria x ananassa HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
FAN03G0566 Fragaria x ananassa HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
FAN06G3452 Fragaria x ananassa HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
Psat7g128160 Pisum sativum HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
Prupe.1G565900 Prunus persica HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
Prupe.5G245700 Prunus persica HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
RcHm_v2.0_Chr1g0326651 Rosa chinensis HOM05D005089 ORTHO05D006232 3.5e-14 82.4 53 75.5
VMungo0647G0479 Vigna mungo HOM05D005089 ORTHO05D006232 3.5e-14 82.4 52 76.9
Migut.K01198 Erythranthe guttata HOM05D005089 ORTHO05D006232 4.6e-14 82.0 53 73.6
Hma1.2p1_0085F.1_g043900 Hydrangea macrophylla HOM05D005089 ORTHO05D006232 4.6e-14 82.0 53 75.5
Sabra09G0054800 Salix brachista HOM05D005089 ORTHO05D006232 4.6e-14 82.0 61 65.6
Aa31LG2G2600 Aethionema arabicum HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 77.4
ATR0665G545 Amborella trichopoda HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
Aqoxy3G00031 Aquilegia oxysepala HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 73.6
arahy.Tifrunner.gnm1.ann1.806F9A Arachis hypogaea HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
arahy.Tifrunner.gnm1.ann1.V3120Y Arachis hypogaea HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
BraA07t30920Z Brassica rapa HOM05D005089 ORTHO05D006232 6.0e-14 81.6 48 77.1
CSS0017333 Camellia sinensis var. sinensis HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
CSS0039179 Camellia sinensis var. sinensis HOM05D005089 ORTHO05D006232 6.0e-14 81.6 61 67.2
CiPaw.13G164200 Carya illinoinensis HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
CDE02G0546 Ceratophyllum demersum HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
CDE04G3341 Ceratophyllum demersum HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
Ciclev10023032m.g Citrus clementina HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 73.6
Cc07_g12600 Coffea canephora HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
HanXRQChr16g0532701 Helianthus annuus HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 73.6
Lalb_Chr09g0333831 Lupinus albus HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
Manes.01G184500 Manihot esculenta HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
Manes.02G144200 Manihot esculenta HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
Medtr4g084910 Medicago truncatula HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 73.6
Oeu012499.1 Olea europaea HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
Oeu012501.1 Olea europaea HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
PSO063G3703 Papaver somniferum HOM05D005089 ORTHO05D006232 6.0e-14 81.6 52 75.0
PSO782G1779 Papaver somniferum HOM05D005089 ORTHO05D006232 6.0e-14 81.6 52 75.0
Potri.001G278000 Populus trichocarpa HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
QL02p103790 Quercus lobata HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
SalBow4G2468 Salvia bowleyana HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
SalBow4G3279 Salvia bowleyana HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
SGA_v2.0_scaffold199G41253 Striga asiatica HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
SGA_v2.0_scaffold5G02979 Striga asiatica HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
Thecc.07G044300 Theobroma cacao HOM05D005089 ORTHO05D006232 6.0e-14 81.6 53 75.5
Actinidia28764 Actinidia chinensis HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Actinidia32998 Actinidia chinensis HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Actinidia35696 Actinidia chinensis HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
AL2G22830 Arabidopsis lyrata HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 75.5
AT1G65700 Arabidopsis thaliana HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 75.5
BcaB03g15324 Brassica carinata HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 75.5
BcaB05g24134 Brassica carinata HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 75.5
A07p32930 Brassica napus HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 75.5
C06p39150 Brassica napus HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 75.5
Cfa009723 Carpinus fangiana HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
ClCG01G014710 Citrullus lanatus HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Haze_23075 Corylus avellana HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
MELO3C002181.2 Cucumis melo HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
CsaV3_1G007620 Cucumis sativus L. HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
DCAR_006980 Daucus carota HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Dinv28272 Davidia involucrata HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Duzib170G0036 Durio zibethinus HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Duzib213G0870 Durio zibethinus HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Glyma.08G172900 Glycine max HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Glyma.15G254600 Glycine max HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Gohir.A01G077100 Gossypium hirsutum HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Gohir.A11G278900 Gossypium hirsutum HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Gohir.D01G064600 Gossypium hirsutum HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Gohir.D11G289700 Gossypium hirsutum HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Gorai.002G085500 Gossypium raimondii HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Gorai.007G313600 Gossypium raimondii HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Lalb_Chr16g0388771 Lupinus albus HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
MBI01_g01233_MAGBIO Magnolia biondii HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
MD06G1241400 Malus domestica HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
MD14G1247500 Malus domestica HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Phvul.001G036000 Phaseolus vulgaris HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Psat6g156280 Pisum sativum HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
PGR083G0158 Punica granatum HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
QL10p035687 Quercus lobata HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Rhsim09G0031900 Rhododendron simsii HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Sed0024889 Sechium edule HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
Sc08g0006860 Simmondsia chinensis HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 75.5
TPR.G34897 Trifolium pratense HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
TAR629G1547 Trochodendron aralioides HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 7.8e-14 81.3 53 73.6
unitig_748.g8445 Utricularia gibba HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
vmacro18488 Vaccinium macrocarpon HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
GSVIVG01024237001 Vitis vinifera HOM05D005089 ORTHO05D006232 7.8e-14 81.3 53 73.6
CiPaw.14G122100 Carya illinoinensis HOM05D005089 ORTHO05D006232 1.0e-13 80.9 53 71.7
Dinv19096 Davidia involucrata HOM05D005089 ORTHO05D006232 1.0e-13 80.9 53 71.7
Lsat_1_v5_gn_3_69640 Lactuca sativa HOM05D005089 ORTHO05D006232 1.0e-13 80.9 53 71.7
Lsat_1_v5_gn_8_114921 Lactuca sativa HOM05D005089 ORTHO05D006232 1.0e-13 80.9 53 71.7
Rhsim08G0023300 Rhododendron simsii HOM05D005089 ORTHO05D006232 1.0e-13 80.9 55 74.5
Sed0026634 Sechium edule HOM05D005089 ORTHO05D006232 1.0e-13 80.9 53 73.6
THA.LOC104822183 Tarenaya hassleriana HOM05D005089 ORTHO05D006232 1.0e-13 80.9 52 75.0
Mapoly0066s0106 Marchantia polymorpha HOM05D005089 ORTHO05D006232 1.3e-13 80.5 53 71.7
TAR371G1221 Trochodendron aralioides HOM05D005089 ORTHO05D006232 1.3e-13 80.5 50 78.0
Eucgr.B02461 Eucalyptus grandis HOM05D005089 ORTHO05D006232 1.7e-13 80.1 53 71.7
HanXRQChr09g0258941 Helianthus annuus HOM05D005089 ORTHO05D006232 1.7e-13 80.1 53 71.7
Pp3c5_26940 Physcomitrium patens HOM05D005089 ORTHO05D006232 1.7e-13 80.1 53 71.7
BolC6t39008H Brassica oleracea HOM05D005089 ORTHO05D006232 3.0e-13 79.3 61 65.6
CAN.G65.220 Capsicum annuum HOM05D005089 ORTHO05D006232 3.0e-13 79.3 53 69.8
ECA234G3971 Erigeron canadensis HOM05D005089 ORTHO05D006232 3.0e-13 79.3 53 73.6
Nn4g23685 Nelumbo nucifera HOM05D005089 ORTHO05D006232 3.0e-13 79.3 53 71.7
Nitab4.5_0000428g0170 Nicotiana tabacum HOM05D005089 ORTHO05D006232 3.0e-13 79.3 53 69.8
Solyc06g073700.3 Solanum lycopersicum HOM05D005089 ORTHO05D006232 3.0e-13 79.3 53 69.8
Sopen06g030100 Solanum pennellii HOM05D005089 ORTHO05D006232 3.0e-13 79.3 53 69.8
AagrBONN_evm.TU.Sc2ySwM_368.1058 Anthoceros agrestis HOM05D005089 ORTHO05D006232 3.9e-13 79.0 53 69.8
TWI36G1307 Tripterygium wilfordii HOM05D005089 ORTHO05D006232 3.9e-13 79.0 53 73.6
TWI81G0160 Tripterygium wilfordii HOM05D005089 ORTHO05D006232 3.9e-13 79.0 53 73.6
THA.LOC104805669 Tarenaya hassleriana HOM05D005089 ORTHO05D006232 5.1e-13 78.6 60 68.3
COL.COLO4_09628 Corchorus olitorius HOM05D005089 ORTHO05D006232 6.6e-13 78.2 53 73.6
Os05g0594900 Oryza sativa ssp. japonica HOM05D005089 ORTHO05D006232 6.6e-13 78.2 53 69.8
Lj5g0002103 Lotus japonicus HOM05D005089 ORTHO05D006232 8.7e-13 77.8 53 75.5
Sp5g20640 Schrenkiella parvula HOM05D005089 ORTHO05D006232 8.7e-13 77.8 50 78.0
SMO353G0002 Selaginella moellendorffii HOM05D005089 ORTHO05D006232 8.7e-13 77.8 53 67.9
BolC2t08297H Brassica oleracea HOM05D005089 ORTHO05D006232 1.1e-12 77.4 50 76.0
Zm00001eb294900 Zea mays HOM05D005089 ORTHO05D006232 1.5e-12 77.0 53 69.8
Migut.C00419 Erythranthe guttata HOM05D005089 ORTHO05D006232 1.9e-12 76.6 43 86.0
PGSC0003DMG400005916 Solanum tuberosum HOM05D005089 ORTHO05D006232 9.6e-12 74.3 42 78.6
PRCOL_00004091 Prasinoderma coloniale HOM05D005089 ORTHO05D006232 4.7e-11 72.0 53 62.3
SEGI_23864 Sequoiadendron giganteum HOM05D005089 ORTHO05D006232 4.7e-11 72.0 46 73.9
SEGI_39652 Sequoiadendron giganteum HOM05D005089 ORTHO05D006232 4.7e-11 72.0 46 73.9
Nn050s41918 Nelumbo nucifera HOM05D005089 ORTHO05D006232 6.2e-11 71.6 53 66.0
Peaxi162Scf00526g00052 Petunia axillaris HOM05D005089 ORTHO05D006232 2.4e-10 69.7 37 83.8
MCO07G660 Micromonas commoda HOM05D005089 ORTHO05D006232 7.6e-09 64.7 53 58.5
Medtr1g085050 Medicago truncatula HOM05D005089 ORTHO05D006232 4.6e-06 55.5 27 92.6


User provided reference genes

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