Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g121270 Amaranthus hybridus HOM05D006964 ORTHO05D008861 1.5e-303 1045.4 548 100.0
EL10Ac6g15329 Beta vulgaris HOM05D006964 ORTHO05D008861 2.7e-236 822.0 551 79.1
AUR62017863 Chenopodium quinoa HOM05D006964 ORTHO05D008861 2.5e-234 815.5 559 77.8
AUR62003549 Chenopodium quinoa HOM05D006964 ORTHO05D008861 3.0e-203 712.2 561 70.9
ClCG07G011010 Citrullus lanatus HOM05D006964 ORTHO05D008861 3.0e-187 659.1 553 63.7
Cfa016256 Carpinus fangiana HOM05D006964 ORTHO05D008861 4.4e-186 655.2 565 63.9
Aqoxy7G03560 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 1.8e-184 649.8 589 62.1
Haze_00006 Corylus avellana HOM05D006964 ORTHO05D008861 5.4e-184 648.3 570 62.6
Sc07g0001890 Simmondsia chinensis HOM05D006964 ORTHO05D008861 3.5e-183 645.6 576 63.2
Glyma.14G003100 Glycine max HOM05D006964 ORTHO05D008861 4.2e-181 638.6 558 62.4
COL.COLO4_20003 Corchorus olitorius HOM05D006964 ORTHO05D008861 1.6e-180 636.7 583 61.2
PGR031G2089 Punica granatum HOM05D006964 ORTHO05D008861 4.7e-180 635.2 576 60.8
Medtr5g098850 Medicago truncatula HOM05D006964 ORTHO05D008861 8.0e-180 634.4 571 60.8
Ciclev10011398m.g Citrus clementina HOM05D006964 ORTHO05D008861 1.0e-179 634.0 556 63.3
Atru.chr8.1035 Acer truncatum HOM05D006964 ORTHO05D008861 1.8e-179 633.3 564 61.5
arahy.Tifrunner.gnm1.ann1.3RSR9Y Arachis hypogaea HOM05D006964 ORTHO05D008861 2.3e-179 632.9 576 59.2
TAR464G0001 Trochodendron aralioides HOM05D006964 ORTHO05D008861 3.0e-179 632.5 569 61.5
QL04p064780 Quercus lobata HOM05D006964 ORTHO05D008861 4.0e-179 632.1 572 61.4
Eucgr.A00951 Eucalyptus grandis HOM05D006964 ORTHO05D008861 5.2e-179 631.7 590 60.3
Nn7g38387 Nelumbo nucifera HOM05D006964 ORTHO05D008861 5.2e-179 631.7 578 60.6
Sed0000140 Sechium edule HOM05D006964 ORTHO05D008861 5.2e-179 631.7 558 61.5
arahy.Tifrunner.gnm1.ann1.EIVX2Z Arachis hypogaea HOM05D006964 ORTHO05D008861 1.5e-178 630.2 578 58.7
QL04p064712 Quercus lobata HOM05D006964 ORTHO05D008861 1.5e-178 630.2 572 61.4
MBI18_g18636_MAGBIO Magnolia biondii HOM05D006964 ORTHO05D008861 4.4e-178 628.6 545 62.8
Potri.011G023800 Populus trichocarpa HOM05D006964 ORTHO05D008861 5.7e-178 628.2 583 60.7
Gohir.D08G060500 Gossypium hirsutum HOM05D006964 ORTHO05D008861 2.4e-176 622.9 573 61.6
Gorai.004G062600 Gossypium raimondii HOM05D006964 ORTHO05D008861 4.1e-176 622.1 573 61.6
Gohir.A08G050700 Gossypium hirsutum HOM05D006964 ORTHO05D008861 9.2e-176 620.9 578 61.8
Cpa.g.sc332.3 Carica papaya HOM05D006964 ORTHO05D008861 1.6e-175 620.2 551 61.2
Lalb_Chr10g0101591 Lupinus albus HOM05D006964 ORTHO05D008861 2.0e-175 619.8 540 62.8
RcHm_v2.0_Chr7g0233321 Rosa chinensis HOM05D006964 ORTHO05D008861 3.5e-175 619.0 570 60.2
CiPaw.05G264600 Carya illinoinensis HOM05D006964 ORTHO05D008861 4.6e-175 618.6 574 60.8
LjContig00081g0000792 Lotus japonicus HOM05D006964 ORTHO05D008861 4.6e-175 618.6 576 60.4
Hma1.2p1_0391F.1_g142860 Hydrangea macrophylla HOM05D006964 ORTHO05D008861 5.0e-174 615.1 585 59.0
Thecc.01G176000 Theobroma cacao HOM05D006964 ORTHO05D008861 1.1e-173 614.0 585 59.0
Sabra11G0014800 Salix brachista HOM05D006964 ORTHO05D008861 1.5e-173 613.6 579 59.1
Manes.16G000700 Manihot esculenta HOM05D006964 ORTHO05D008861 1.9e-173 613.2 574 59.9
TPR.G35899 Trifolium pratense HOM05D006964 ORTHO05D008861 9.5e-173 610.9 574 59.6
CDE02G0076 Ceratophyllum demersum HOM05D006964 ORTHO05D008861 1.2e-172 610.5 543 62.1
CAN.G843.21 Capsicum annuum HOM05D006964 ORTHO05D008861 1.6e-172 610.1 587 57.6
Sopen03g037220 Solanum pennellii HOM05D006964 ORTHO05D008861 4.7e-172 608.6 573 57.6
PGSC0003DMG400014180 Solanum tuberosum HOM05D006964 ORTHO05D008861 8.0e-172 607.8 580 57.8
Nitab4.5_0000663g0200 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.0e-171 607.4 591 57.2
Lsat_1_v5_gn_1_40040 Lactuca sativa HOM05D006964 ORTHO05D008861 1.8e-171 606.7 558 60.4
Carub.0001s2577 Capsella rubella HOM05D006964 ORTHO05D008861 3.1e-171 605.9 556 60.3
Phvul.008G290000 Phaseolus vulgaris HOM05D006964 ORTHO05D008861 3.1e-171 605.9 557 59.1
Ca_06492_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 4.0e-171 605.5 581 60.4
Solyc03g118320.1 Solanum lycopersicum HOM05D006964 ORTHO05D008861 6.8e-171 604.7 573 57.8
FAN18G1087 Fragaria x ananassa HOM05D006964 ORTHO05D008861 1.5e-170 603.6 559 59.9
FvH4_5g33930 Fragaria vesca HOM05D006964 ORTHO05D008861 2.0e-170 603.2 560 60.5
FAN08G0714 Fragaria x ananassa HOM05D006964 ORTHO05D008861 2.0e-170 603.2 559 59.7
Nitab4.5_0000660g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 2.6e-170 602.8 576 58.7
AL1G40630 Arabidopsis lyrata HOM05D006964 ORTHO05D008861 4.4e-170 602.1 545 61.1
BcaC06g35275 Brassica carinata HOM05D006964 ORTHO05D008861 1.3e-169 600.5 551 60.4
BolC7t42303H Brassica oleracea HOM05D006964 ORTHO05D008861 1.3e-169 600.5 551 60.4
AT1G24290 Arabidopsis thaliana HOM05D006964 ORTHO05D008861 1.7e-169 600.1 545 60.6
C07p17970 Brassica napus HOM05D006964 ORTHO05D008861 3.7e-169 599.0 545 59.8
Rhsim02G0171800 Rhododendron simsii HOM05D006964 ORTHO05D008861 8.3e-169 597.8 577 60.1
Peaxi162Scf00314g00515 Petunia axillaris HOM05D006964 ORTHO05D008861 2.4e-168 596.3 561 58.5
Aa31LG7G9960 Aethionema arabicum HOM05D006964 ORTHO05D008861 3.2e-168 595.9 560 59.1
MD03G1299000 Malus domestica HOM05D006964 ORTHO05D008861 5.4e-168 595.1 585 57.4
Sp1g23470 Schrenkiella parvula HOM05D006964 ORTHO05D008861 5.4e-168 595.1 547 60.7
A07p12030 Brassica napus HOM05D006964 ORTHO05D008861 9.2e-168 594.3 550 60.2
BraA07t28989Z Brassica rapa HOM05D006964 ORTHO05D008861 1.2e-167 594.0 550 60.0
vmacro11021 Vaccinium macrocarpon HOM05D006964 ORTHO05D008861 1.2e-167 594.0 597 57.5
Thhalv10009719m.g Eutrema salsugineum HOM05D006964 ORTHO05D008861 3.5e-167 592.4 545 60.9
BcaB03g13997 Brassica carinata HOM05D006964 ORTHO05D008861 1.3e-166 590.5 551 59.3
CARHR026810 Cardamine hirsuta HOM05D006964 ORTHO05D008861 1.3e-166 590.5 545 60.0
HanXRQChr11g0342451 Helianthus annuus HOM05D006964 ORTHO05D008861 1.3e-166 590.5 560 59.8
Nitab4.5_0004302g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.3e-166 590.5 575 57.9
CsaV3_4G007230 Cucumis sativus L. HOM05D006964 ORTHO05D008861 2.3e-166 589.7 434 69.1
SHI28197 Sapria himalayana HOM05D006964 ORTHO05D008861 1.1e-165 587.4 571 57.3
Oeu061991.1 Olea europaea HOM05D006964 ORTHO05D008861 2.5e-165 586.3 565 58.2
Psat2g001680 Pisum sativum HOM05D006964 ORTHO05D008861 7.3e-165 584.7 444 69.4
THA.LOC104827506 Tarenaya hassleriana HOM05D006964 ORTHO05D008861 1.6e-164 583.6 553 58.0
Cc11_g00270 Coffea canephora HOM05D006964 ORTHO05D008861 4.7e-164 582.0 611 54.2
Lj1A623T74 Lonicera japonica HOM05D006964 ORTHO05D008861 4.7e-164 582.0 559 57.1
unitig_699.g19570 Utricularia gibba HOM05D006964 ORTHO05D008861 1.5e-162 577.0 551 58.8
Dinv35124 Davidia involucrata HOM05D006964 ORTHO05D008861 4.9e-161 572.0 570 57.9
ATR0763G192 Amborella trichopoda HOM05D006964 ORTHO05D008861 7.3e-157 558.1 602 53.8
ECA234G0414 Erigeron canadensis HOM05D006964 ORTHO05D008861 9.5e-157 557.8 560 55.7
DCAR_005902 Daucus carota HOM05D006964 ORTHO05D008861 1.2e-156 557.4 566 55.3
SGA_v2.0_scaffold73G24408 Striga asiatica HOM05D006964 ORTHO05D008861 6.2e-156 555.1 575 55.3
GSVIVG01015905001 Vitis vinifera HOM05D006964 ORTHO05D008861 8.9e-155 551.2 429 68.3
Nitab4.5_0002450g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 4.9e-153 545.4 585 54.0
Lj1C622G7 Lonicera japonica HOM05D006964 ORTHO05D008861 2.4e-152 543.1 441 63.9
SEGI_30607 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 3.4e-146 522.7 723 44.8
HPP92_016414 Vanilla planifolia HOM05D006964 ORTHO05D008861 5.6e-141 505.4 530 54.3
Actinidia35156 Actinidia chinensis HOM05D006964 ORTHO05D008861 6.6e-134 481.9 456 57.7
SMO116G0181 Selaginella moellendorffii HOM05D006964 ORTHO05D008861 5.8e-130 468.8 430 56.0
HPP92_016337 Vanilla planifolia HOM05D006964 ORTHO05D008861 5.1e-118 429.1 474 53.0
Mapoly0100s0005 Marchantia polymorpha HOM05D006964 ORTHO05D008861 6.9e-115 418.7 576 43.8
Pp3c24_11680 Physcomitrium patens HOM05D006964 ORTHO05D008861 7.6e-114 415.2 807 37.2
Pp3c23_21270 Physcomitrium patens HOM05D006964 ORTHO05D008861 2.4e-107 393.7 575 41.7
Haze_26752 Corylus avellana HOM05D006964 ORTHO05D008861 5.3e-83 312.8 443 42.7
Nitab4.5_0000843g0040 Nicotiana tabacum HOM05D006964 ORTHO05D008861 2.7e-82 310.5 248 64.5
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 9.4e-80 302.0 464 39.2
PSO677G0001 Papaver somniferum HOM05D006964 ORTHO05D008861 3.6e-79 300.1 242 64.9
Ca_28576_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 1.0e-78 298.5 423 41.8
SalBow7G3142 Salvia bowleyana HOM05D006964 ORTHO05D008861 4.1e-67 260.0 363 47.1
SalBow7G2824 Salvia bowleyana HOM05D006964 ORTHO05D008861 2.2e-60 237.7 155 72.9
Migut.M00128 Erythranthe guttata HOM05D006964 ORTHO05D008861 3.0e-41 174.1 255 43.5
Eucgr.F00067 Eucalyptus grandis HOM05D006964 ORTHO05D008861 7.3e-40 169.5 146 61.0
Nn1g06845 Nelumbo nucifera HOM05D006964 ORTHO05D008861 7.3e-40 169.5 139 61.2
Actinidia18866 Actinidia chinensis HOM05D006964 ORTHO05D008861 2.7e-34 151.0 251 40.2
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.8e-30 138.3 279 37.3
Medtr6g036640 Medicago truncatula HOM05D006964 ORTHO05D008861 8.4e-28 129.4 117 57.3
PGSC0003DMG400021041 Solanum tuberosum HOM05D006964 ORTHO05D008861 5.1e-25 120.2 76 75.0
Pp3c7_25960 Physcomitrium patens HOM05D006964 ORTHO05D008861 6.4e-20 103.2 102 53.9
MD11G1318300 Malus domestica HOM05D006964 ORTHO05D008861 1.5e-16 92.0 64 68.8
SEGI_03426 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 3.5e-10 70.9 98 42.9
Pp3s356_30 Physcomitrium patens HOM05D006964 ORTHO05D317654 1.5e-08 65.5 250 25.2
CsaV3_4G007240 Cucumis sativus L. HOM05D006964 ORTHO05D008861 2.5e-08 64.7 102 47.1
CDE07G1761 Ceratophyllum demersum HOM05D001470 ORTHO05D006430 3.3e-08 64.3 286 23.8
Aqoxy1G02492 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 1.6e-07 62.0 95 44.2
MSTRG.1421 Avicennia marina HOM05D001470 ORTHO05D006430 1.6e-07 62.0 290 24.5
TAR381G1563 Trochodendron aralioides HOM05D001470 ORTHO05D006430 1.6e-07 62.0 290 24.5
GSVIVG01008825001 Vitis vinifera HOM05D001470 ORTHO05D006430 2.1e-07 61.6 289 24.2
Gorai.010G052800 Gossypium raimondii HOM05D001470 ORTHO05D006430 2.8e-07 61.2 289 24.9
Solyc11g012820.2 Solanum lycopersicum HOM05D001470 ORTHO05D006430 2.8e-07 61.2 289 24.2
Sopen11g007560 Solanum pennellii HOM05D001470 ORTHO05D006430 2.8e-07 61.2 289 24.2
Gohir.D06G047200 Gossypium hirsutum HOM05D001470 ORTHO05D006430 3.7e-07 60.8 289 24.9
Lalb_Chr08g0241231 Lupinus albus HOM05D001470 ORTHO05D006430 3.7e-07 60.8 292 25.0
Aqoxy5G02375 Aquilegia oxysepala HOM05D001470 ORTHO05D006430 4.8e-07 60.5 291 24.1
Carub.0002s2436 Capsella rubella HOM05D001470 ORTHO05D006756 4.8e-07 60.5 220 26.4
Cfa018559 Carpinus fangiana HOM05D001470 ORTHO05D006430 4.8e-07 60.5 292 24.0
Phvul.009G128066 Phaseolus vulgaris HOM05D001470 ORTHO05D006430 4.8e-07 60.5 284 25.0
Peaxi162Scf00310g00416 Petunia axillaris HOM05D001470 ORTHO05D006430 6.2e-07 60.1 289 24.2
PGR044G0726 Punica granatum HOM05D001470 ORTHO05D006430 6.2e-07 60.1 289 23.5
PGSC0003DMG400006047 Solanum tuberosum HOM05D001470 ORTHO05D006430 6.2e-07 60.1 288 24.0
Nitab4.5_0000111g0110 Nicotiana tabacum HOM05D001470 ORTHO05D006430 8.1e-07 59.7 297 24.6
Glyma.06G116000 Glycine max HOM05D001470 ORTHO05D006430 1.1e-06 59.3 290 24.5
AL2G37670 Arabidopsis lyrata HOM05D001470 ORTHO05D006756 1.4e-06 58.9 287 25.8
AUR62042245 Chenopodium quinoa HOM05D001195 ORTHO05D001138 1.4e-06 58.9 233 25.3
Gohir.A06G046900 Gossypium hirsutum HOM05D001470 ORTHO05D006430 1.4e-06 58.9 289 24.6
Manes.02G166700 Manihot esculenta HOM05D001470 ORTHO05D006430 1.4e-06 58.9 291 24.4
Actinidia15224 Actinidia chinensis HOM05D001470 ORTHO05D006430 1.8e-06 58.5 291 24.1
AUR62032487 Chenopodium quinoa HOM05D001195 ORTHO05D001138 1.8e-06 58.5 233 25.8
ECA232G1439 Erigeron canadensis HOM05D001470 ORTHO05D006430 1.8e-06 58.5 289 23.9
Migut.L00248 Erythranthe guttata HOM05D001470 ORTHO05D006430 1.8e-06 58.5 288 25.0
Glyma.04G246800 Glycine max HOM05D001470 ORTHO05D006430 1.8e-06 58.5 281 24.9
HanXRQChr11g0326191 Helianthus annuus HOM05D001470 ORTHO05D006430 1.8e-06 58.5 293 24.6
MSTRG.25372 Avicennia marina HOM05D001470 ORTHO05D006756 2.4e-06 58.2 225 25.3
AT1G77470 Arabidopsis thaliana HOM05D001470 ORTHO05D006756 3.1e-06 57.8 287 24.4
AUR62008715 Chenopodium quinoa HOM05D001470 ORTHO05D006430 3.1e-06 57.8 289 23.9
AUR62025519 Chenopodium quinoa HOM05D001470 ORTHO05D006430 3.1e-06 57.8 289 23.9
Haze_17520 Corylus avellana HOM05D001470 ORTHO05D006430 3.1e-06 57.8 297 24.2
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 3.1e-06 57.8 291 23.7
Hma1.2p1_0542F.1_g175030 Hydrangea macrophylla HOM05D001470 ORTHO05D006430 3.1e-06 57.8 290 25.2
MD15G1344500 Malus domestica HOM05D001470 ORTHO05D006430 3.1e-06 57.8 291 24.7
TPR.G13461 Trifolium pratense HOM05D001470 ORTHO05D006430 3.1e-06 57.8 290 23.4
Nitab4.5_0006720g0030 Nicotiana tabacum HOM05D001470 ORTHO05D006430 4.0e-06 57.4 258 25.2
Rhsim11G0069700 Rhododendron simsii HOM05D001470 ORTHO05D006756 4.0e-06 57.4 216 25.9
THA.LOC104800216 Tarenaya hassleriana HOM05D001470 ORTHO05D006430 4.0e-06 57.4 290 24.5
AL1G34850 Arabidopsis lyrata HOM05D001470 ORTHO05D006430 5.3e-06 57.0 290 24.8
Mapoly0014s0096 Marchantia polymorpha HOM05D001470 ORTHO05D006430 5.3e-06 57.0 286 25.2
Psat5g085800 Pisum sativum HOM05D001470 ORTHO05D006430 5.3e-06 57.0 290 23.4
Potri.002G081200 Populus trichocarpa HOM05D001470 ORTHO05D006756 5.3e-06 57.0 216 28.7
RcHm_v2.0_Chr6g0296411 Rosa chinensis HOM05D001470 ORTHO05D006430 5.3e-06 57.0 289 24.2
Sed0019306 Sechium edule HOM05D001470 ORTHO05D006430 5.3e-06 57.0 290 25.2
Sc02g0005030 Simmondsia chinensis HOM05D001470 ORTHO05D006430 5.3e-06 57.0 289 24.6
Thecc.08G130500 Theobroma cacao HOM05D001470 ORTHO05D006430 5.3e-06 57.0 289 23.9
TWI60G0500 Tripterygium wilfordii HOM05D001470 ORTHO05D006430 5.3e-06 57.0 290 23.8
Aa31LG4G7480 Aethionema arabicum HOM05D001470 ORTHO05D006756 6.9e-06 56.6 215 26.0
CSS0002859 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006430 6.9e-06 56.6 289 23.5
CSS0028817 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 6.9e-06 56.6 216 25.9
CSS0035008 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006430 6.9e-06 56.6 289 23.5
CANSAT56G2008 Cannabis sativa HOM05D001470 ORTHO05D006430 6.9e-06 56.6 290 24.1
CiPaw.16G025300 Carya illinoinensis HOM05D001470 ORTHO05D006430 6.9e-06 56.6 284 23.2
ATR1001G012 Amborella trichopoda HOM05D001470 ORTHO05D006430 9.0e-06 56.2 280 23.9
ClCG11G015940 Citrullus lanatus HOM05D001470 ORTHO05D006430 9.0e-06 56.2 289 23.9
COL.COLO4_03955 Corchorus olitorius HOM05D001470 ORTHO05D006430 9.0e-06 56.2 282 24.1
Duzib093G1303 Durio zibethinus HOM05D001470 ORTHO05D006430 9.0e-06 56.2 289 24.6
Eucgr.F04332 Eucalyptus grandis HOM05D001470 ORTHO05D006430 9.0e-06 56.2 290 23.4
Lj1g0021925 Lotus japonicus HOM05D001470 ORTHO05D006430 9.0e-06 56.2 290 24.5
Os12g0176500 Oryza sativa ssp. japonica HOM05D001470 ORTHO05D006430 9.0e-06 56.2 289 25.3
Sed0023365 Sechium edule HOM05D001470 ORTHO05D006756 9.0e-06 56.2 230 25.7
SMO308G0051 Selaginella moellendorffii HOM05D001470 ORTHO05D006430 9.0e-06 56.2 295 25.4


User provided reference genes

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