Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g014980 Amaranthus hybridus HOM05D003409 ORTHO05D004015 2.9e-145 518.8 326 100.0
QL08p003492 Quercus lobata HOM05D003409 ORTHO05D004015 1.8e-33 147.5 140 60.7
TWI38G2383 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 1.8e-33 147.5 137 62.0
Nn4g24629 Nelumbo nucifera HOM05D003409 ORTHO05D004015 7.4e-32 142.1 162 56.2
Manes.11G044000 Manihot esculenta HOM05D003409 ORTHO05D004015 3.7e-31 139.8 165 52.1
FAN12G1033 Fragaria x ananassa HOM05D003409 ORTHO05D004015 8.2e-31 138.7 138 58.7
FAN17G1343 Fragaria x ananassa HOM05D003409 ORTHO05D004015 8.2e-31 138.7 138 59.4
Ciclev10007740m.g Citrus clementina HOM05D003409 ORTHO05D004015 3.1e-30 136.7 112 65.2
FAN17G0359 Fragaria x ananassa HOM05D003409 ORTHO05D004015 3.1e-30 136.7 137 59.1
TWI39G0812 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 3.1e-30 136.7 136 58.8
Potri.001G369600 Populus trichocarpa HOM05D003409 ORTHO05D004015 5.3e-30 136.0 137 56.2
RcHm_v2.0_Chr4g0408681 Rosa chinensis HOM05D003409 ORTHO05D004015 5.3e-30 136.0 137 56.9
CiPaw.11G205600 Carya illinoinensis HOM05D003409 ORTHO05D004015 7.0e-30 135.6 137 58.4
Cfa016917 Carpinus fangiana HOM05D003409 ORTHO05D004015 1.2e-29 134.8 163 52.8
Eucgr.C03787 Eucalyptus grandis HOM05D003409 ORTHO05D004015 1.2e-29 134.8 107 68.2
Dinv10352 Davidia involucrata HOM05D003409 ORTHO05D004015 2.0e-29 134.0 183 48.1
Eucgr.F02036 Eucalyptus grandis HOM05D003409 ORTHO05D004015 7.7e-29 132.1 107 67.3
Sabra16G0242500 Salix brachista HOM05D003409 ORTHO05D004015 1.0e-28 131.7 186 46.8
FAN07G2833 Fragaria x ananassa HOM05D003409 ORTHO05D004015 1.3e-28 131.3 134 56.7
MD04G1044800 Malus domestica HOM05D003409 ORTHO05D004015 1.7e-28 131.0 139 59.0
SGA_v2.0_scaffold42G15966 Striga asiatica HOM05D003409 ORTHO05D004015 1.7e-28 131.0 137 55.5
FvH4_4g11570 Fragaria vesca HOM05D003409 ORTHO05D004015 2.2e-28 130.6 132 57.6
FAN12G3679 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.2e-28 130.6 132 57.6
Glyma.18G075000 Glycine max HOM05D003409 ORTHO05D004015 5.0e-28 129.4 166 50.6
FAN04G1394 Fragaria x ananassa HOM05D003409 ORTHO05D004015 6.5e-28 129.0 132 56.8
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 6.5e-28 129.0 138 55.8
Nitab4.5_0002789g0050 Nicotiana tabacum HOM05D003409 ORTHO05D004015 6.5e-28 129.0 137 55.5
COL.COLO4_07725 Corchorus olitorius HOM05D003409 ORTHO05D004015 8.5e-28 128.6 137 54.7
Migut.H01746 Erythranthe guttata HOM05D003409 ORTHO05D004015 8.5e-28 128.6 133 59.4
CSS0010821 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 1.1e-27 128.3 115 60.0
CDE07G1104 Ceratophyllum demersum HOM05D003409 ORTHO05D004015 1.1e-27 128.3 137 55.5
HPP92_010888 Vanilla planifolia HOM05D003409 ORTHO05D004015 1.1e-27 128.3 132 56.1
HPP92_010890 Vanilla planifolia HOM05D003409 ORTHO05D004015 1.1e-27 128.3 132 56.1
Actinidia35412 Actinidia chinensis HOM05D003409 ORTHO05D004015 1.4e-27 127.9 135 52.6
Hma1.2p1_1804F.1_g303050 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 1.4e-27 127.9 159 50.3
Hma1.2p1_1804F.1_g303060 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 1.4e-27 127.9 159 50.3
Solyc07g052110.4 Solanum lycopersicum HOM05D003409 ORTHO05D004015 1.9e-27 127.5 137 54.7
CANSAT11G2129 Cannabis sativa HOM05D003409 ORTHO05D004015 2.5e-27 127.1 133 54.9
Sopen07g025740 Solanum pennellii HOM05D003409 ORTHO05D004015 2.5e-27 127.1 137 54.7
SGA_v2.0_scaffold1G00379 Striga asiatica HOM05D003409 ORTHO05D004015 4.2e-27 126.3 134 53.7
Thhalv10024758m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 5.5e-27 125.9 110 60.0
unitig_578.g16234 Utricularia gibba HOM05D003409 ORTHO05D004015 5.5e-27 125.9 137 52.6
Medtr3g460700 Medicago truncatula HOM05D003409 ORTHO05D004015 7.2e-27 125.6 140 52.1
Zm00001eb253180 Zea mays HOM05D003409 ORTHO05D004015 1.6e-26 124.4 132 54.5
arahy.Tifrunner.gnm1.ann1.PKXG4Q Arachis hypogaea HOM05D003409 ORTHO05D004015 2.1e-26 124.0 130 57.7
Atru.chr2.3736 Acer truncatum HOM05D003409 ORTHO05D004015 3.6e-26 123.2 110 61.8
Atru.chr2.3741 Acer truncatum HOM05D003409 ORTHO05D004015 3.6e-26 123.2 110 61.8
arahy.Tifrunner.gnm1.ann1.K9VFVK Arachis hypogaea HOM05D003409 ORTHO05D004015 3.6e-26 123.2 125 58.4
Cpa.g.sc12.127 Carica papaya HOM05D003409 ORTHO05D004015 3.6e-26 123.2 110 62.7
Gohir.D13G135000 Gossypium hirsutum HOM05D003409 ORTHO05D004015 3.6e-26 123.2 137 51.8
Lj1A892G90 Lonicera japonica HOM05D003409 ORTHO05D004015 4.7e-26 122.9 130 54.6
SalBow5G1153 Salvia bowleyana HOM05D003409 ORTHO05D004015 4.7e-26 122.9 140 51.4
Sp7g24560 Schrenkiella parvula HOM05D003409 ORTHO05D004015 4.7e-26 122.9 110 60.0
Lalb_Chr15g0082251 Lupinus albus HOM05D003409 ORTHO05D004015 1.0e-25 121.7 110 60.0
Zm00001eb189070 Zea mays HOM05D003409 ORTHO05D004015 1.4e-25 121.3 117 57.3
BcaC09g50636 Brassica carinata HOM05D003409 ORTHO05D004015 1.8e-25 120.9 110 59.1
Aa31LG5G11970 Aethionema arabicum HOM05D003409 ORTHO05D004015 2.3e-25 120.6 110 60.0
Prupe.8G036800 Prunus persica HOM05D003409 ORTHO05D004015 2.3e-25 120.6 112 58.0
BcaNung02400 Brassica carinata HOM05D003409 ORTHO05D004015 3.0e-25 120.2 110 58.2
Lsat_1_v5_gn_1_7960 Lactuca sativa HOM05D003409 ORTHO05D004015 8.8e-25 118.6 106 60.4
Lj6g0020357 Lotus japonicus HOM05D003409 ORTHO05D004015 8.8e-25 118.6 133 53.4
PGR083G1781 Punica granatum HOM05D003409 ORTHO05D004015 8.8e-25 118.6 133 54.1
Solyc02g079415.1 Solanum lycopersicum HOM05D003409 ORTHO05D004015 8.8e-25 118.6 138 52.2
Sopen02g024220 Solanum pennellii HOM05D003409 ORTHO05D004015 8.8e-25 118.6 138 52.2
GSVIVG01014717001 Vitis vinifera HOM05D003409 ORTHO05D004015 8.8e-25 118.6 132 53.8
ATR0751G119 Amborella trichopoda HOM05D003409 ORTHO05D004015 2.0e-24 117.5 152 51.3
CAN.G424.40 Capsicum annuum HOM05D003409 ORTHO05D004015 2.0e-24 117.5 135 54.8
Sc03g0011610 Simmondsia chinensis HOM05D003409 ORTHO05D004015 2.0e-24 117.5 109 61.5
Ah.01g014990 Amaranthus hybridus HOM05D052022 ORTHO05D031004 2.6e-24 117.1 154 51.3
Os02g0724600 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 2.6e-24 117.1 136 50.0
EL10Ac4g07529 Beta vulgaris HOM05D003409 ORTHO05D004015 3.3e-24 116.7 119 57.1
Duzib213G0349 Durio zibethinus HOM05D003409 ORTHO05D004015 3.3e-24 116.7 112 57.1
Oeu005478.2 Olea europaea HOM05D003409 ORTHO05D004015 3.3e-24 116.7 109 58.7
Os09g0551300 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 3.3e-24 116.7 137 49.6
Peaxi162Scf00057g02234 Petunia axillaris HOM05D003409 ORTHO05D004015 3.3e-24 116.7 110 60.0
Hund01871 Selenicereus undatus HOM05D003409 ORTHO05D004015 3.3e-24 116.7 110 59.1
PGSC0003DMG400022346 Solanum tuberosum HOM05D003409 ORTHO05D004015 3.3e-24 116.7 138 51.4
TPR.G17957 Trifolium pratense HOM05D003409 ORTHO05D004015 3.3e-24 116.7 112 57.1
Psat5g165320 Pisum sativum HOM05D003409 ORTHO05D004015 4.4e-24 116.3 112 58.0
Aqoxy1G01862 Aquilegia oxysepala HOM05D003409 ORTHO05D004015 5.7e-24 115.9 141 51.1
HanXRQChr11g0342791 Helianthus annuus HOM05D003409 ORTHO05D004015 5.7e-24 115.9 136 53.7
Hund01870 Selenicereus undatus HOM05D003409 ORTHO05D004015 5.7e-24 115.9 110 58.2
Carub.0007s1427 Capsella rubella HOM05D003409 ORTHO05D004015 7.4e-24 115.5 163 47.2
CARHR234180 Cardamine hirsuta HOM05D003409 ORTHO05D004015 7.4e-24 115.5 140 49.3
Rhsim10G0056000 Rhododendron simsii HOM05D003409 ORTHO05D004015 1.3e-23 114.8 171 45.6
AagrBONN_evm.TU.Sc2ySwM_117.3404 Anthoceros agrestis HOM05D003409 ORTHO05D004015 1.7e-23 114.4 136 49.3
ECA248G0890 Erigeron canadensis HOM05D003409 ORTHO05D004015 1.7e-23 114.4 113 55.8
THA.LOC104817712 Tarenaya hassleriana HOM05D003409 ORTHO05D004015 1.7e-23 114.4 109 58.7
BolC1t02194H Brassica oleracea HOM05D003409 ORTHO05D004015 2.2e-23 114.0 110 56.4
AT4G26600 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 3.7e-23 113.2 169 45.6
Oeu039418.1 Olea europaea HOM05D003409 ORTHO05D004015 3.7e-23 113.2 108 56.5
ClCG09G021450 Citrullus lanatus HOM05D003409 ORTHO05D004015 6.3e-23 112.5 160 46.9
Lsat_1_v5_gn_2_49000 Lactuca sativa HOM05D003409 ORTHO05D004015 6.3e-23 112.5 106 57.5
BcaC04g20188 Brassica carinata HOM05D003409 ORTHO05D004015 8.2e-23 112.1 110 56.4
A10p13110 Brassica napus HOM05D003409 ORTHO05D004015 8.2e-23 112.1 110 56.4
C09p46870 Brassica napus HOM05D003409 ORTHO05D004015 8.2e-23 112.1 110 56.4
BolC9t57537H Brassica oleracea HOM05D003409 ORTHO05D004015 8.2e-23 112.1 110 56.4
BraA10t43407Z Brassica rapa HOM05D003409 ORTHO05D004015 8.2e-23 112.1 110 56.4
Pp3c1_15210 Physcomitrium patens HOM05D003409 ORTHO05D004015 8.2e-23 112.1 137 48.9
VMungo0540G1920 Vigna mungo HOM05D003409 ORTHO05D004015 8.2e-23 112.1 106 57.5
AL7G26290 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 1.1e-22 111.7 169 45.6
Thecc.07G009800 Theobroma cacao HOM05D003409 ORTHO05D004015 1.4e-22 111.3 110 55.5
Mapoly0034s0108 Marchantia polymorpha HOM05D003409 ORTHO05D004015 1.8e-22 110.9 141 45.4
Lalb_Chr20g0114091 Lupinus albus HOM05D003409 ORTHO05D004015 2.4e-22 110.5 111 55.9
CsaV3_7G011550 Cucumis sativus L. HOM05D003409 ORTHO05D004015 4.1e-22 109.8 137 49.6
BcaB08g35958 Brassica carinata HOM05D003409 ORTHO05D004015 5.3e-22 109.4 131 50.4
Rhsim06G0084600 Rhododendron simsii HOM05D003409 ORTHO05D004015 5.3e-22 109.4 147 48.3
Gohir.A13G131500 Gossypium hirsutum HOM05D003409 ORTHO05D004015 7.0e-22 109.0 112 52.7
MELO3C024955.2 Cucumis melo HOM05D003409 ORTHO05D004015 9.1e-22 108.6 137 48.9
Glyma.08G332000 Glycine max HOM05D003409 ORTHO05D004015 9.1e-22 108.6 106 56.6
Sed0016663 Sechium edule HOM05D003409 ORTHO05D004015 1.2e-21 108.2 137 49.6
AUR62035665 Chenopodium quinoa HOM05D003409 ORTHO05D004015 1.6e-21 107.8 136 50.7
Sp6g17770 Schrenkiella parvula HOM05D003409 ORTHO05D004015 1.6e-21 107.8 141 50.4
SMO367G0604 Selaginella moellendorffii HOM05D003409 ORTHO05D004015 2.0e-21 107.5 140 48.6
C01p22640 Brassica napus HOM05D003409 ORTHO05D004015 2.6e-21 107.1 136 48.5
AUR62017142 Chenopodium quinoa HOM05D003409 ORTHO05D004015 2.6e-21 107.1 137 50.4
Gorai.013G151300 Gossypium raimondii HOM05D003409 ORTHO05D004015 2.6e-21 107.1 111 52.3
Nitab4.5_0000160g0180 Nicotiana tabacum HOM05D003409 ORTHO05D004015 2.6e-21 107.1 118 54.2
SEGI_08867 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 2.6e-21 107.1 110 51.8
MBI14_g18948_MAGBIO Magnolia biondii HOM05D003409 ORTHO05D004015 3.5e-21 106.7 86 59.3
vmacro11609 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 4.5e-21 106.3 177 42.4
Cc04_g00350 Coffea canephora HOM05D003409 ORTHO05D004015 5.9e-21 105.9 82 65.9
Gohir.A01G093200 Gossypium hirsutum HOM05D003409 ORTHO05D004015 5.9e-21 105.9 155 44.5
Gorai.002G102200 Gossypium raimondii HOM05D003409 ORTHO05D004015 5.9e-21 105.9 155 44.5
PSO210G5345 Papaver somniferum HOM05D003409 ORTHO05D004015 5.9e-21 105.9 137 48.2
A01p17840 Brassica napus HOM05D003409 ORTHO05D004015 7.7e-21 105.5 85 62.4
BraA01t01740Z Brassica rapa HOM05D003409 ORTHO05D004015 1.0e-20 105.1 85 62.4
BolC2t07681H Brassica oleracea HOM05D003409 ORTHO05D004015 1.7e-20 104.4 112 55.4
TAR383G0304 Trochodendron aralioides HOM05D003409 ORTHO05D004015 1.7e-20 104.4 89 66.3
Gohir.D01G077700 Gossypium hirsutum HOM05D003409 ORTHO05D004015 2.9e-20 103.6 155 43.9
Phvul.006G059200 Phaseolus vulgaris HOM05D003409 ORTHO05D004015 2.9e-20 103.6 106 53.8
vmacro15782 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 2.9e-20 103.6 149 45.6
PSO210G2179 Papaver somniferum HOM05D003409 ORTHO05D004015 3.8e-20 103.2 134 47.8
Carub.0008s1625 Capsella rubella HOM05D003409 ORTHO05D004015 1.5e-19 101.3 113 51.3
Haze_09846 Corylus avellana HOM05D003409 ORTHO05D004015 3.2e-19 100.1 94 59.6
Thhalv10012859m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 3.2e-19 100.1 135 49.6
AT5G55920 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 4.2e-19 99.8 116 50.9
DCAR_017070 Daucus carota HOM05D003409 ORTHO05D004015 4.2e-19 99.8 82 57.3
Ca_12445_v3 Cicer arietinum L. HOM05D003409 ORTHO05D004015 5.5e-19 99.4 121 49.6
Aa31LG3G11830 Aethionema arabicum HOM05D003409 ORTHO05D004015 1.2e-18 98.2 167 41.9
A02p09450 Brassica napus HOM05D003409 ORTHO05D004015 3.6e-18 96.7 79 63.3
C02p15740 Brassica napus HOM05D003409 ORTHO05D004015 3.6e-18 96.7 79 63.3
BraA02t06009Z Brassica rapa HOM05D003409 ORTHO05D004015 3.6e-18 96.7 79 63.3
PSO478G4279 Papaver somniferum HOM05D003409 ORTHO05D004015 3.6e-18 96.7 78 62.8
BcaB05g22238 Brassica carinata HOM05D003409 ORTHO05D004015 6.1e-18 95.9 115 50.4
AL8G31480 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 6.7e-17 92.4 116 46.6
CARHR269290 Cardamine hirsuta HOM05D003409 ORTHO05D004015 4.4e-16 89.7 112 50.0
CBR_g8798 Chara braunii HOM05D003409 ORTHO05D004015 4.4e-16 89.7 134 41.0
BcaC07g39178 Brassica carinata HOM05D003409 ORTHO05D004015 8.2e-15 85.5 116 47.4
BcaC07g37821 Brassica carinata HOM05D003409 ORTHO05D004015 1.8e-14 84.3 108 50.9
BcaC03g15509 Brassica carinata HOM05D003409 ORTHO05D004015 4.1e-14 83.2 112 50.0
A02p19390 Brassica napus HOM05D003409 ORTHO05D004015 3.5e-13 80.1 112 49.1
SEGI_06120 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 5.9e-13 79.3 79 48.1
C03p75670 Brassica napus HOM05D003409 ORTHO05D023923 3.8e-12 76.6 83 50.6
BolC2t10305H Brassica oleracea HOM05D003409 ORTHO05D004015 6.5e-12 75.9 106 47.2
A09p23650 Brassica napus HOM05D003409 ORTHO05D004015 8.5e-12 75.5 88 51.1
Actinidia37139 Actinidia chinensis HOM05D003409 ORTHO05D004015 5.5e-11 72.8 73 50.7
Ah.01g018170 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.6e-10 71.2 73 58.9
Dinv40878 Davidia involucrata HOM05D003409 ORTHO05D004015 2.1e-10 70.9 159 37.1
PRCOL_00002474 Prasinoderma coloniale HOM05D003409 ORTHO05D004015 8.0e-10 68.9 79 38.0
C08p21680 Brassica napus HOM05D003409 ORTHO05D004015 3.0e-09 67.0 106 44.3
Cre06.g273413 Chlamydomonas reinhardtii HOM05D003409 ORTHO05D004015 4.0e-09 66.6 148 33.8
Nitab4.5_0003852g0020 Nicotiana tabacum HOM05D003409 ORTHO05D004015 3.4e-08 63.5 104 38.5
MCO14G316 Micromonas commoda HOM05D003409 ORTHO05D004015 2.2e-07 60.8 53 50.9
C09p31870 Brassica napus HOM05D000263 ORTHO05D040446 6.3e-07 59.3 46 60.9
BolC9t56044H Brassica oleracea HOM05D000263 ORTHO05D040446 1.4e-06 58.2 45 62.2
C02p15590 Brassica napus HOM05D003409 ORTHO05D004015 1.8e-06 57.8 52 57.7


User provided reference genes

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