Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 1.5e-167 592.8 307 100.0
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.5e-132 475.3 329 74.5
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.9e-126 454.9 317 75.4
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.4e-120 436.8 327 68.8
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 4.7e-113 411.8 320 69.1
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.5e-111 406.8 348 62.6
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.6e-111 406.0 330 64.5
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.4e-111 405.6 330 64.5
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 5.8e-111 404.8 323 64.4
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 5.8e-111 404.8 331 65.9
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.9e-110 402.5 330 65.8
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 6.4e-110 401.4 329 63.8
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.4e-109 400.2 327 66.1
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 3.2e-109 399.1 333 62.2
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.2e-108 397.1 328 64.6
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 3.5e-108 395.6 330 63.3
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.3e-107 392.9 326 63.2
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 3.9e-107 392.1 328 61.9
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 5.1e-107 391.7 305 64.3
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 6.6e-107 391.3 330 62.7
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.1e-106 390.6 327 63.0
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.9e-106 389.8 328 63.1
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.9e-106 389.8 328 62.2
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 3.3e-106 389.0 354 61.3
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 5.6e-106 388.3 328 62.5
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 5.6e-106 388.3 329 61.4
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.6e-105 386.7 327 62.7
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.6e-105 386.7 327 63.0
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.8e-105 386.0 327 60.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 4.0e-104 382.1 330 60.3
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 5.2e-104 381.7 327 59.9
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 5.2e-104 381.7 329 60.2
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.8e-104 381.3 327 59.0
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.2e-103 380.6 329 62.6
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 4.4e-103 378.6 327 59.6
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 4.4e-103 378.6 328 62.8
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 5.8e-103 378.3 329 62.3
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 5.8e-103 378.3 327 58.4
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 5.8e-103 378.3 327 59.9
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 7.6e-103 377.9 329 62.3
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 7.6e-103 377.9 329 59.9
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 7.6e-103 377.9 329 59.9
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 9.9e-103 377.5 327 60.9
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.7e-102 376.7 329 59.6
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.9e-102 375.9 327 61.2
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.8e-102 375.6 327 58.4
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.4e-102 374.8 327 59.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.1e-101 374.0 327 60.2
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.9e-101 373.2 328 60.4
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.9e-101 373.2 323 62.5
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.4e-101 372.9 329 61.1
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 3.2e-101 372.5 328 59.5
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.2e-101 372.5 328 59.1
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 4.2e-101 372.1 327 59.9
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 5.4e-101 371.7 327 59.6
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.4e-101 371.7 329 61.1
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.2e-100 370.5 326 58.9
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.6e-100 370.2 329 60.8
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 2.1e-100 369.8 329 59.9
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.5e-100 369.0 326 57.7
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 3.5e-100 369.0 328 60.4
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 4.6e-100 368.6 326 59.8
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 7.8e-100 367.9 326 57.7
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.7e-99 366.7 328 57.6
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.7e-99 366.7 326 58.3
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 2.3e-99 366.3 293 66.2
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 3.0e-99 365.9 327 59.0
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.0e-99 365.9 326 58.3
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-98 364.0 401 52.9
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.5e-98 363.6 329 59.3
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.9e-98 363.2 326 58.3
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.9e-98 363.2 328 56.7
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 5.6e-98 361.7 327 58.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 7.3e-98 361.3 329 59.0
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 4.8e-97 358.6 329 59.0
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.2e-97 358.2 326 56.1
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 8.1e-97 357.8 327 56.9
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.8e-96 356.7 326 55.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 3.1e-96 355.9 327 56.6
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 3.1e-96 355.9 330 60.0
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.0e-96 355.5 327 57.5
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 9.0e-96 354.4 362 54.7
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 9.0e-96 354.4 326 55.8
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.5e-95 353.6 327 56.9
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 3.4e-95 352.4 327 56.3
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.5e-95 352.1 327 57.2
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 5.8e-95 351.7 327 56.0
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 7.6e-95 351.3 326 55.2
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.9e-94 349.4 359 54.3
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 4.9e-94 348.6 327 57.5
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 1.4e-93 347.1 327 56.3
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.4e-93 347.1 327 56.9
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.2e-93 345.9 329 55.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 4.2e-93 345.5 327 57.2
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.3e-93 344.4 336 53.6
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 9.3e-93 344.4 323 56.7
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.2e-92 344.0 327 55.7
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 4.6e-92 342.0 327 55.7
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 4.6e-92 342.0 327 55.7
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 8.7e-91 337.8 279 63.8
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 5.6e-90 335.1 322 56.5
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 4.5e-87 325.5 333 54.4
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 2.9e-86 322.8 322 53.4
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 6.4e-86 321.6 327 53.5
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.9e-85 320.1 330 51.5
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 9.3e-85 317.8 329 54.4
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.0e-83 314.3 310 58.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.0e-83 312.8 325 52.3
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.5e-82 310.5 271 59.8
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 6.2e-81 305.1 324 52.8
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 5.1e-75 285.4 313 51.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 8.7e-75 284.6 180 81.1
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 3.3e-74 282.7 319 49.5
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.4e-71 272.7 317 48.9
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 7.2e-69 265.0 322 45.3
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 6.9e-64 248.4 285 50.2
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.5e-62 241.9 310 45.2
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.1e-61 241.1 322 43.8
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 3.6e-60 236.1 321 41.1
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.6e-58 229.9 302 44.4
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 4.8e-57 225.7 177 66.7
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.2e-54 216.9 131 84.0
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 3.6e-52 209.5 190 57.9
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 2.3e-51 206.8 133 75.9
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 2.3e-51 206.8 286 40.9
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 2.2e-49 200.3 131 74.0
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 2.4e-48 196.8 178 58.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 5.3e-48 195.7 303 37.6
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 4.2e-45 186.0 178 53.4
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.8e-43 180.6 133 63.2
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.7e-42 175.6 194 49.5
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 3.1e-40 169.9 128 69.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 2.2e-38 163.7 180 50.6
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.2e-36 157.9 141 58.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.1e-36 157.1 137 58.4
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.7e-36 156.8 145 56.6
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 5.7e-34 149.1 266 38.0
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 7.0e-32 142.1 180 44.4
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.2e-30 137.1 177 45.8
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.5e-29 133.7 132 56.1
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.6e-28 131.0 126 51.6
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.7e-28 129.4 132 49.2
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.0e-27 128.3 82 70.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 2.3e-27 127.1 143 48.3
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.5e-26 124.4 124 50.0
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 2.6e-26 123.6 181 40.3
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.7e-26 122.5 146 44.5
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.7e-25 119.8 306 29.4
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.8e-24 117.5 117 54.7
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 7.0e-24 115.5 107 53.3
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.5e-23 113.2 68 82.4
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 4.3e-21 106.3 205 37.1
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.2e-20 104.8 177 35.6
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.4e-17 92.4 129 38.8
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 3.5e-15 86.7 62 72.6
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 8.6e-14 82.0 82 51.2
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-13 81.6 75 54.7
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.1e-13 81.6 75 54.7
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.0e-11 75.1 122 37.7
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 4.9e-09 66.2 61 52.5
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 7.0e-08 62.4 53 58.5


User provided reference genes

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