Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 7.2e-74 280.4 135 100.0
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 8.9e-32 140.6 114 60.5
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 7.1e-29 131.0 109 58.7
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 3.5e-28 128.6 108 58.3
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 4.6e-28 128.3 93 62.4
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.5e-26 123.2 104 57.7
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 5.6e-26 121.3 100 56.0
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 1.6e-25 119.8 102 54.9
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 1.6e-25 119.8 102 54.9
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 1.6e-25 119.8 104 60.6
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 2.1e-25 119.4 87 63.2
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 3.6e-25 118.6 119 50.4
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 6.2e-25 117.9 89 61.8
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.4e-24 116.7 91 59.3
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 2.4e-24 115.9 79 65.8
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 2.4e-24 115.9 92 59.8
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 2.4e-24 115.9 83 61.4
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 3.1e-24 115.5 80 67.5
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 3.1e-24 115.5 79 65.8
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 6.9e-24 114.4 88 61.4
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 9.0e-24 114.0 83 62.7
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 1.5e-23 113.2 82 62.2
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 2.0e-23 112.8 91 59.3
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 5.8e-23 111.3 85 57.6
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 1.3e-22 110.2 79 63.3
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 1.3e-22 110.2 81 63.0
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 2.2e-22 109.4 85 60.0
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 6.4e-22 107.8 85 55.3
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 8.4e-22 107.5 112 43.8
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 1.9e-21 106.3 89 57.3
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 3.2e-21 105.5 107 51.4
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 7.1e-21 104.4 83 59.0
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 7.1e-21 104.4 81 56.8
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 1.2e-20 103.6 81 59.3
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 1.6e-20 103.2 117 46.2
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 2.1e-20 102.8 85 55.3
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 2.1e-20 102.8 101 49.5
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 2.7e-20 102.4 79 58.2
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 3.5e-20 102.1 86 57.0
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 3.5e-20 102.1 95 52.6
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.0e-20 101.3 86 53.5
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 6.0e-20 101.3 86 53.5
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.8e-19 99.8 81 55.6
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 2.3e-19 99.4 112 45.5
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 3.0e-19 99.0 100 53.0
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 3.0e-19 99.0 81 59.3
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 3.0e-19 99.0 82 56.1
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.9e-19 98.6 84 53.6
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 3.9e-19 98.6 84 52.4
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 5.1e-19 98.2 81 60.5
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 6.7e-19 97.8 85 50.6
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 8.7e-19 97.4 117 40.2
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 8.7e-19 97.4 97 51.5
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 1.1e-18 97.1 108 45.4
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 1.1e-18 97.1 81 53.1
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 1.1e-18 97.1 81 53.1
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 1.5e-18 96.7 83 55.4
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 1.9e-18 96.3 108 45.4
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.9e-18 96.3 116 44.0
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 2.5e-18 95.9 80 51.2
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 2.5e-18 95.9 103 52.4
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 2.5e-18 95.9 84 54.8
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 2.5e-18 95.9 85 52.9
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 3.3e-18 95.5 83 50.6
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 3.3e-18 95.5 103 47.6
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 4.3e-18 95.1 108 45.4
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 4.3e-18 95.1 98 50.0
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 4.3e-18 95.1 81 56.8
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 4.3e-18 95.1 110 45.5
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 4.3e-18 95.1 113 43.4
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 5.6e-18 94.7 84 53.6
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 5.6e-18 94.7 82 53.7
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 9.6e-18 94.0 83 54.2
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 9.6e-18 94.0 99 48.5
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 1.3e-17 93.6 92 50.0
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 1.3e-17 93.6 130 36.9
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 1.3e-17 93.6 82 56.1
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.6e-17 93.2 85 47.1
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 1.6e-17 93.2 102 44.1
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.1e-17 92.8 103 44.7
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 2.1e-17 92.8 82 52.4
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.1e-17 92.8 99 47.5
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 2.8e-17 92.4 84 47.6
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 2.8e-17 92.4 99 47.5
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 3.6e-17 92.0 97 46.4
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 3.6e-17 92.0 84 52.4
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 3.6e-17 92.0 78 57.7
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 4.8e-17 91.7 78 55.1
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 4.8e-17 91.7 85 49.4
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 4.8e-17 91.7 70 65.7
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 6.2e-17 91.3 111 37.8
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 6.2e-17 91.3 81 53.1
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 8.1e-17 90.9 92 45.7
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 8.1e-17 90.9 85 50.6
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 8.1e-17 90.9 85 52.9
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 1.1e-16 90.5 103 43.7
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.1e-16 90.5 90 51.1
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.4e-16 90.1 90 47.8
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.8e-16 89.7 81 51.9
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 1.8e-16 89.7 102 46.1
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 1.8e-16 89.7 102 46.1
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.4e-16 89.4 93 48.4
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 2.4e-16 89.4 89 50.6
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 4.0e-16 88.6 84 46.4
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 5.3e-16 88.2 83 50.6
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 5.3e-16 88.2 79 53.2
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 6.9e-16 87.8 91 46.2
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 6.9e-16 87.8 87 49.4
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 6.9e-16 87.8 88 51.1
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 6.9e-16 87.8 108 40.7
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 9.0e-16 87.4 84 50.0
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 9.0e-16 87.4 81 54.3
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 1.2e-15 87.0 96 49.0
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.2e-15 87.0 110 44.5
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.2e-15 87.0 81 55.6
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.5e-15 86.7 81 53.1
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 2.0e-15 86.3 81 48.1
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 2.0e-15 86.3 97 48.5
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 2.0e-15 86.3 105 44.8
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 2.0e-15 86.3 86 46.5
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 2.6e-15 85.9 73 57.5
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 2.6e-15 85.9 100 45.0
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 3.4e-15 85.5 80 51.2
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 3.4e-15 85.5 80 50.0
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 3.4e-15 85.5 80 50.0
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 3.4e-15 85.5 89 51.7
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 3.4e-15 85.5 114 38.6
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 4.5e-15 85.1 113 38.9
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 5.8e-15 84.7 80 50.0
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 5.8e-15 84.7 114 42.1
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.8e-15 84.7 81 51.9
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 5.8e-15 84.7 80 51.2
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 5.8e-15 84.7 105 40.0
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 5.8e-15 84.7 99 45.5
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 7.6e-15 84.3 86 46.5
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 9.9e-15 84.0 81 50.6
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 9.9e-15 84.0 106 44.3
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 9.9e-15 84.0 81 54.3
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 9.9e-15 84.0 81 50.6
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.3e-14 83.6 104 45.2
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 1.3e-14 83.6 81 46.9
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 1.3e-14 83.6 101 42.6
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.7e-14 83.2 95 42.1
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 2.2e-14 82.8 89 41.6
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 2.2e-14 82.8 81 49.4
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 3.8e-14 82.0 80 48.8
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 4.9e-14 81.6 82 52.4
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 4.9e-14 81.6 106 42.5
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 6.4e-14 81.3 97 43.3
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 6.4e-14 81.3 86 47.7
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.4e-13 80.1 78 51.3
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 2.4e-13 79.3 85 43.5
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 4.2e-13 78.6 80 46.2
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 9.3e-13 77.4 81 48.1
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 2.1e-12 76.3 102 38.2
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 3.5e-12 75.5 109 41.3
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 3.5e-12 75.5 86 43.0
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 3.5e-12 75.5 116 39.7
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 6.0e-12 74.7 74 52.7
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.3e-11 73.6 101 40.6
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 8.7e-11 70.9 80 46.2
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 1.9e-10 69.7 92 40.2
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 2.5e-10 69.3 80 43.8
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 2.5e-10 69.3 80 43.8
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 2.5e-10 69.3 86 43.0
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 4.3e-10 68.6 80 43.8
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 4.3e-10 68.6 86 39.5
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 5.6e-10 68.2 108 38.9
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 7.4e-10 67.8 80 43.8
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 7.4e-10 67.8 108 38.9
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 2.8e-09 65.9 53 60.4
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 2.4e-08 62.8 50 66.0
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 1.0e-06 57.4 53 39.6
AT1G80650 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 2.2e-06 56.2 38 60.5
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 2.9e-06 55.8 54 51.9
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 8.4e-06 54.3 62 37.1


User provided reference genes

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