Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.3e-108 395.6 198 100.0
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 3.5e-61 238.8 207 63.3
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 2.0e-56 223.0 214 57.9
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 5.5e-54 214.9 202 59.4
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 7.2e-54 214.5 194 62.9
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 7.9e-53 211.1 196 60.2
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 1.0e-52 210.7 216 56.9
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 5.1e-52 208.4 197 58.4
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 4.3e-51 205.3 198 58.6
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 1.6e-50 203.4 206 56.3
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 6.9e-49 198.0 191 56.0
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 9.0e-49 197.6 208 54.8
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 6.7e-44 181.4 199 49.2
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 8.5e-39 164.5 166 51.8
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 1.3e-31 140.6 98 65.3
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 3.6e-29 132.5 212 42.0
AT1G80650 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 8.8e-28 127.9 153 51.6
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 1.3e-26 124.0 212 38.2
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 2.4e-25 119.8 78 62.8
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 4.1e-25 119.0 91 59.3
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 7.0e-25 118.2 196 37.8
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 2.7e-24 116.3 196 37.2
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 3.5e-24 115.9 170 44.1
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 4.5e-24 115.5 185 40.0
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 5.9e-24 115.2 154 41.6
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 1.3e-23 114.0 77 62.3
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 2.2e-23 113.2 177 39.5
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 2.9e-23 112.8 173 42.8
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 6.5e-23 111.7 92 56.5
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.1e-22 110.9 88 59.1
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.5e-22 110.5 79 59.5
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.5e-22 110.5 176 40.9
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 1.9e-22 110.2 195 32.8
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 1.9e-22 110.2 77 59.7
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 3.2e-22 109.4 168 42.3
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 4.2e-22 109.0 90 48.9
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 4.2e-22 109.0 78 60.3
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 5.5e-22 108.6 86 55.8
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 1.2e-21 107.5 78 60.3
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 1.6e-21 107.1 189 34.9
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 1.6e-21 107.1 221 37.1
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 2.1e-21 106.7 85 54.1
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 2.7e-21 106.3 122 43.4
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 3.6e-21 105.9 125 41.6
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 4.7e-21 105.5 100 50.0
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 6.1e-21 105.1 203 33.5
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.1e-21 105.1 90 48.9
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 6.1e-21 105.1 78 59.0
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 6.1e-21 105.1 90 48.9
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 8.0e-21 104.8 79 59.5
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 1.0e-20 104.4 85 56.5
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 1.4e-20 104.0 178 37.6
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.4e-20 104.0 90 48.9
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.4e-20 104.0 90 48.9
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 1.8e-20 103.6 79 53.2
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 2.3e-20 103.2 102 48.0
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 2.3e-20 103.2 84 56.0
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 3.0e-20 102.8 118 44.9
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 4.0e-20 102.4 87 49.4
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 4.0e-20 102.4 132 41.7
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 5.2e-20 102.1 90 50.0
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 6.8e-20 101.7 79 53.2
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 6.8e-20 101.7 77 55.8
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 6.8e-20 101.7 77 55.8
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.8e-20 101.7 92 53.3
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.8e-20 101.7 92 53.3
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 8.8e-20 101.3 78 53.8
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 1.2e-19 100.9 169 37.9
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.2e-19 100.9 78 53.8
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 1.2e-19 100.9 77 57.1
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 1.5e-19 100.5 77 54.5
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 1.5e-19 100.5 77 54.5
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 1.5e-19 100.5 89 48.3
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 2.0e-19 100.1 140 40.7
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 2.0e-19 100.1 79 58.2
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.0e-19 100.1 85 54.1
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 2.0e-19 100.1 131 42.7
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 2.6e-19 99.8 103 43.7
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 2.6e-19 99.8 145 40.0
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 2.6e-19 99.8 191 34.0
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 3.4e-19 99.4 92 52.2
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 4.4e-19 99.0 77 54.5
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 4.4e-19 99.0 129 41.1
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 4.4e-19 99.0 145 39.3
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 4.4e-19 99.0 81 56.8
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 4.4e-19 99.0 171 35.1
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 5.7e-19 98.6 190 33.7
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 5.7e-19 98.6 78 53.8
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 5.7e-19 98.6 78 53.8
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 5.7e-19 98.6 77 54.5
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 5.7e-19 98.6 79 57.0
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.7e-19 98.6 78 53.8
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 9.8e-19 97.8 177 36.7
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 9.8e-19 97.8 73 60.3
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 9.8e-19 97.8 144 40.3
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.3e-18 97.4 78 53.8
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 1.7e-18 97.1 79 51.9
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 1.7e-18 97.1 169 37.3
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 1.7e-18 97.1 100 48.0
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 1.7e-18 97.1 134 38.1
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 1.7e-18 97.1 91 49.5
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.7e-18 97.1 144 38.2
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.7e-18 97.1 105 43.8
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 3.7e-18 95.9 190 32.6
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 3.7e-18 95.9 156 35.9
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 3.7e-18 95.9 82 52.4
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 4.8e-18 95.5 85 51.8
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 4.8e-18 95.5 77 53.2
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 4.8e-18 95.5 158 34.2
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 6.3e-18 95.1 179 34.6
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 8.3e-18 94.7 154 34.4
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.1e-17 94.4 134 39.6
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.4e-17 94.0 197 32.0
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.4e-17 94.0 75 54.7
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.8e-17 93.6 82 50.0
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 1.8e-17 93.6 136 39.0
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 2.4e-17 93.2 79 53.2
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.4e-17 93.2 78 52.6
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 3.1e-17 92.8 80 50.0
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 4.1e-17 92.4 170 41.2
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 5.4e-17 92.0 103 44.7
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 7.0e-17 91.7 84 48.8
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 7.0e-17 91.7 85 44.7
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 9.1e-17 91.3 137 40.1
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 9.1e-17 91.3 78 48.7
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 9.1e-17 91.3 196 31.6
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.2e-16 90.9 63 58.7
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.2e-16 90.9 138 37.0
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 1.6e-16 90.5 114 39.5
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 1.6e-16 90.5 78 48.7
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 1.6e-16 90.5 78 46.2
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.0e-16 90.1 147 35.4
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.0e-16 90.1 148 35.8
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 2.0e-16 90.1 83 47.0
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 2.7e-16 89.7 90 45.6
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 3.5e-16 89.4 80 48.8
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 3.5e-16 89.4 76 50.0
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 4.5e-16 89.0 77 50.6
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 5.9e-16 88.6 76 51.3
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 5.9e-16 88.6 225 28.4
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 5.9e-16 88.6 77 50.6
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 7.7e-16 88.2 196 31.6
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 7.7e-16 88.2 210 31.9
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 1.0e-15 87.8 113 38.1
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.3e-15 87.4 92 45.7
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 1.7e-15 87.0 188 33.0
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 2.9e-15 86.3 78 50.0
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 2.9e-15 86.3 78 47.4
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 3.8e-15 85.9 100 45.0
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.8e-15 85.9 130 35.4
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 3.8e-15 85.9 79 46.8
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 3.8e-15 85.9 136 36.8
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.8e-15 85.9 78 44.9
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 5.0e-15 85.5 95 44.2
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 6.5e-15 85.1 81 46.9
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 6.5e-15 85.1 146 34.2
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 8.5e-15 84.7 189 30.7
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 1.1e-14 84.3 78 48.7
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 1.5e-14 84.0 198 31.3
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 2.5e-14 83.2 78 48.7
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 3.2e-14 82.8 162 34.6
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 3.2e-14 82.8 198 30.8
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 3.2e-14 82.8 76 48.7
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 3.2e-14 82.8 135 36.3
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 4.2e-14 82.4 73 50.7
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.5e-14 82.0 162 33.3
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 5.5e-14 82.0 198 30.8
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 5.5e-14 82.0 81 45.7
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 5.5e-14 82.0 99 37.4
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 9.4e-14 81.3 163 35.6
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 6.3e-10 68.6 177 32.8
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 1.8e-09 67.0 46 67.4
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 7.0e-09 65.1 55 43.6
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 2.7e-08 63.2 49 61.2
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 4.5e-08 62.4 58 43.1
HPP92_008857 Vanilla planifolia HOM05D000399 ORTHO05D000304 3.8e-07 59.3 92 35.9
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 5.0e-07 58.9 46 60.9
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 1.9e-06 57.0 40 55.0
Thecc.07G031400 Theobroma cacao HOM05D000399 ORTHO05D000304 3.3e-06 56.2 84 34.5
SalBow7G4661 Salvia bowleyana HOM05D000399 ORTHO05D010012 7.3e-06 55.1 47 51.1


User provided reference genes

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