Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 5.8e-153 544.3 289 100.0
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 4.0e-106 388.7 339 66.1
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 2.0e-105 386.3 384 58.6
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 9.3e-103 377.5 391 60.6
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 1.0e-101 374.0 382 58.4
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 2.3e-101 372.9 372 57.8
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 9.6e-100 367.5 387 59.9
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 1.3e-99 367.1 398 57.3
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 2.8e-99 365.9 397 55.4
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 4.8e-99 365.2 392 55.9
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 1.1e-98 364.0 392 55.6
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.1e-98 364.0 389 56.3
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 3.1e-98 362.5 390 56.4
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 4.0e-98 362.1 392 56.1
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 5.3e-98 361.7 391 56.5
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 6.9e-98 361.3 397 54.9
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 6.9e-98 361.3 381 58.5
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.2e-97 360.5 395 55.2
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 1.2e-97 360.5 393 55.5
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 1.5e-97 360.1 335 63.6
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 1.5e-97 360.1 395 57.0
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 1.5e-97 360.1 372 57.3
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 1.7e-96 356.7 390 56.7
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 1.7e-96 356.7 393 56.0
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 2.2e-96 356.3 389 56.0
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 4.9e-96 355.1 398 54.0
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 8.4e-96 354.4 401 55.4
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 1.1e-95 354.0 395 54.9
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 1.1e-95 354.0 395 54.9
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 1.9e-95 353.2 378 56.6
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 2.5e-95 352.8 396 54.3
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 4.2e-95 352.1 402 53.5
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 4.2e-95 352.1 399 54.4
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 4.2e-95 352.1 389 54.0
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 1.2e-94 350.5 400 53.8
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 2.1e-94 349.7 379 58.6
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 2.7e-94 349.4 395 55.4
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 3.5e-94 349.0 395 54.7
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 3.5e-94 349.0 388 54.9
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 3.5e-94 349.0 388 55.9
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 7.9e-94 347.8 381 57.0
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 7.9e-94 347.8 380 55.3
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 1.3e-93 347.1 384 57.0
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 1.8e-93 346.7 404 54.2
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 2.3e-93 346.3 403 55.8
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 2.3e-93 346.3 381 55.9
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 3.0e-93 345.9 403 56.1
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 3.9e-93 345.5 398 53.5
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 8.7e-93 344.4 390 53.8
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 1.1e-92 344.0 395 54.2
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 1.9e-92 343.2 384 54.7
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 1.9e-92 343.2 403 54.1
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 2.5e-92 342.8 395 54.2
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 5.7e-92 341.7 400 52.2
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 9.7e-92 340.9 396 51.8
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 4.8e-91 338.6 378 54.2
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 6.3e-91 338.2 454 48.7
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 1.1e-90 337.4 396 53.0
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 1.4e-90 337.0 389 51.4
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 2.4e-90 336.3 375 55.7
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 5.3e-90 335.1 392 54.1
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 5.3e-90 335.1 390 52.1
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 2.6e-89 332.8 382 55.0
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 1.3e-88 330.5 385 53.2
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 2.9e-88 329.3 381 53.0
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 8.5e-88 327.8 383 53.0
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 8.5e-88 327.8 400 52.0
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 2.5e-87 326.2 393 52.4
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 2.5e-87 326.2 400 51.8
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 1.6e-86 323.6 404 51.0
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 1.1e-84 317.4 395 51.4
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 5.7e-84 315.1 394 51.5
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 5.7e-84 315.1 382 53.4
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 5.7e-84 315.1 364 54.9
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 7.4e-84 314.7 377 50.7
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 7.4e-84 314.7 404 50.0
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 2.2e-83 313.2 397 50.6
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 2.2e-83 313.2 391 50.9
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 8.2e-83 311.2 371 52.3
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 4.1e-82 308.9 378 51.1
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 4.1e-82 308.9 431 47.3
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 9.1e-82 307.8 365 55.3
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 9.1e-82 307.8 365 55.3
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 2.0e-81 306.6 387 50.4
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 8.5e-80 301.2 344 57.8
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 8.5e-80 301.2 380 47.4
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 3.2e-79 299.3 389 51.2
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 3.2e-79 299.3 411 48.4
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 2.7e-78 296.2 380 52.1
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 2.3e-77 293.1 399 50.9
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 5.1e-77 292.0 397 50.6
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 5.1e-77 292.0 382 50.3
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 6.7e-77 291.6 378 50.5
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 8.8e-77 291.2 198 86.9
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 2.6e-76 289.7 374 50.5
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 9.7e-76 287.7 368 51.6
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 1.3e-75 287.3 387 48.3
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 4.8e-75 285.4 374 50.0
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 6.3e-75 285.0 380 50.8
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 7.0e-74 281.6 303 53.1
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 3.5e-73 279.3 317 58.7
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 5.9e-73 278.5 430 43.3
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 7.7e-73 278.1 385 48.6
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 1.3e-72 277.3 454 43.6
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 1.7e-64 250.4 335 50.7
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 4.7e-62 242.3 185 69.7
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 4.7e-62 242.3 206 61.7
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 6.1e-62 241.9 169 74.0
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 1.0e-61 241.1 168 74.4
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 1.0e-61 241.1 168 74.4
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 1.0e-61 241.1 168 74.4
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 3.0e-61 239.6 297 51.2
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 5.9e-57 225.3 343 49.0
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 2.1e-54 216.9 470 36.8
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 3.4e-52 209.5 165 69.7
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 4.5e-49 199.1 295 47.8
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 2.3e-48 196.8 289 47.8
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.5e-47 194.1 323 43.7
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 1.5e-47 194.1 163 60.7
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 2.3e-45 186.8 140 69.3
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 5.7e-44 182.2 275 52.4
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 6.3e-43 178.7 101 83.2
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 1.1e-42 177.9 289 40.5
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 3.2e-42 176.4 287 44.9
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 7.0e-42 175.3 97 83.5
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 1.2e-41 174.5 98 84.7
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 2.2e-35 153.7 171 47.4
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 4.1e-34 149.4 98 77.6
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 8.6e-32 141.7 202 39.1
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 2.4e-26 123.6 92 66.3
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 6.8e-21 105.5 118 57.6
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 3.5e-17 93.2 97 49.5
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 1.0e-16 91.7 196 35.2
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 2.3e-16 90.5 88 50.0
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 3.0e-16 90.1 73 64.4
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 1.7e-08 64.3 109 42.2
SGA_v2.0_scaffold2G01114 Striga asiatica HOM05D001563 ORTHO05D001956 1.9e-07 60.8 79 35.4
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 3.3e-07 60.1 91 36.3
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 3.3e-07 60.1 91 37.4
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 3.3e-07 60.1 100 35.0
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 5.6e-07 59.3 93 35.5
Dinv26814 Davidia involucrata HOM05D001563 ORTHO05D001956 5.6e-07 59.3 86 33.7
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 7.3e-07 58.9 80 40.0
Lsat_1_v5_gn_4_153381 Lactuca sativa HOM05D001563 ORTHO05D012319 1.3e-06 58.2 80 35.0
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.3e-06 58.2 91 35.2
SEGI_21623 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.6e-06 57.8 79 36.7
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 2.8e-06 57.0 75 38.7
Oeu007445.5 Olea europaea HOM05D001563 ORTHO05D001956 2.8e-06 57.0 91 34.1
SGA_v2.0_scaffold221G42757 Striga asiatica HOM05D001563 ORTHO05D001956 2.8e-06 57.0 79 32.9
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 3.6e-06 56.6 79 34.2
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 4.8e-06 56.2 129 30.2
ECA232G1424 Erigeron canadensis HOM05D001563 ORTHO05D001956 6.2e-06 55.8 79 34.2
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 6.2e-06 55.8 111 32.4
Ca_19741_v3 Cicer arietinum L. HOM05D001563 ORTHO05D001956 8.1e-06 55.5 79 35.4
COL.COLO4_17145 Corchorus olitorius HOM05D001563 ORTHO05D001956 8.1e-06 55.5 79 35.4
MBI16_g17453_MAGBIO Magnolia biondii HOM05D001563 ORTHO05D001956 8.1e-06 55.5 79 34.2


User provided reference genes

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