Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 2.1e-28 128.3 63 100.0
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 2.1e-28 128.3 63 100.0
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 2.1e-28 128.3 63 100.0
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 6.2e-28 126.7 63 98.4
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 8.1e-28 126.3 63 98.4
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 1.1e-27 125.9 63 96.8
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 1.1e-27 125.9 63 96.8
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 1.1e-27 125.9 63 96.8
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 1.1e-27 125.9 63 96.8
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 1.1e-27 125.9 62 98.4
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 1.1e-27 125.9 62 98.4
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 1.1e-27 125.9 63 96.8
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 1.1e-27 125.9 63 96.8
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 1.4e-27 125.6 63 96.8
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 1.4e-27 125.6 63 96.8
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 1.4e-27 125.6 63 96.8
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.8e-27 125.2 63 96.8
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 1.8e-27 125.2 63 96.8
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 2.4e-27 124.8 63 96.8
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 3.1e-27 124.4 63 95.2
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 3.1e-27 124.4 63 95.2
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 3.1e-27 124.4 63 96.8
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 3.1e-27 124.4 63 96.8
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 3.1e-27 124.4 63 96.8
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 3.1e-27 124.4 63 96.8
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 3.1e-27 124.4 63 95.2
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 3.1e-27 124.4 63 95.2
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 4.0e-27 124.0 63 95.2
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 4.0e-27 124.0 60 100.0
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 5.3e-27 123.6 63 95.2
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 5.3e-27 123.6 63 95.2
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 5.3e-27 123.6 63 95.2
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 6.9e-27 123.2 63 95.2
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 6.9e-27 123.2 63 95.2
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 6.9e-27 123.2 63 95.2
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 6.9e-27 123.2 63 93.7
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 9.0e-27 122.9 63 95.2
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 9.0e-27 122.9 63 95.2
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 9.0e-27 122.9 63 95.2
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 9.0e-27 122.9 63 95.2
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 9.0e-27 122.9 63 95.2
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 1.2e-26 122.5 62 95.2
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 2.6e-26 121.3 63 92.1
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 2.6e-26 121.3 60 96.7
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 3.4e-26 120.9 62 91.9
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 3.4e-26 120.9 63 93.7
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 4.5e-26 120.6 59 98.3
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 5.8e-26 120.2 63 93.7
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 7.6e-26 119.8 60 95.0
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 1.3e-25 119.0 60 95.0
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 1.3e-25 119.0 63 88.9
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 1.7e-25 118.6 60 93.3
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 1.7e-25 118.6 60 93.3
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 1.7e-25 118.6 60 93.3
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 1.7e-25 118.6 60 93.3
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 2.2e-25 118.2 60 93.3
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 4.9e-25 117.1 60 91.7
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 4.9e-25 117.1 60 91.7
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 6.5e-25 116.7 60 93.3
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 6.5e-25 116.7 59 96.6
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 6.5e-25 116.7 59 96.6
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 6.5e-25 116.7 59 96.6
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 1.4e-24 115.5 60 90.0
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 1.9e-24 115.2 76 78.9
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 4.2e-24 114.0 57 94.7
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 2.7e-23 111.3 60 86.7
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 4.6e-23 110.5 57 94.7
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 6.0e-23 110.2 57 89.5
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 1.0e-22 109.4 60 85.0
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 1.3e-22 109.0 63 87.3
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 2.3e-22 108.2 53 100.0
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 5.1e-22 107.1 53 98.1
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 6.7e-22 106.7 55 92.7
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.7e-22 106.3 52 100.0
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.7e-22 106.3 52 100.0
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 1.1e-21 105.9 53 96.2
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 1.9e-21 105.1 53 94.3
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 4.3e-21 104.0 52 96.2
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 5.7e-21 103.6 53 94.3
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 5.7e-21 103.6 53 94.3
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 3.7e-20 100.9 59 76.3
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 4.6e-15 84.0 60 75.0
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 4.6e-15 84.0 83 57.8
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 6.1e-15 83.6 55 63.6
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 3.3e-13 77.8 61 73.8
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 3.1e-11 71.2 34 97.1
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 6.9e-11 70.1 35 97.1
QL01p002563 Quercus lobata HOM05D004922 ORTHO05D005990 6.5e-09 63.5 34 88.2
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 3.6e-07 57.8 27 100.0
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 3.6e-07 57.8 27 100.0
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 2.3e-06 55.1 27 96.3
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 3.0e-06 54.7 27 92.6


User provided reference genes

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