Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 6.7e-241 837.0 453 100.0
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 2.3e-76 290.4 198 86.9
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 1.3e-50 204.9 260 51.9
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 4.2e-49 199.9 213 59.6
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 7.1e-49 199.1 254 57.5
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 7.1e-49 199.1 219 60.3
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 5.6e-46 189.5 261 48.3
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 1.6e-45 188.0 258 49.6
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 1.1e-44 185.3 260 55.0
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 4.0e-44 183.3 270 47.8
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 4.0e-44 183.3 264 48.9
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 5.3e-44 183.0 264 48.5
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 6.9e-44 182.6 267 52.4
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.2e-43 181.8 267 47.9
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 1.5e-43 181.4 272 47.4
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 2.0e-43 181.0 267 47.6
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 3.4e-43 180.3 270 49.3
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 3.4e-43 180.3 268 47.4
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 5.8e-43 179.5 270 47.0
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 7.6e-43 179.1 259 47.5
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 1.3e-42 178.3 256 48.0
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 2.2e-42 177.6 256 48.0
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 2.2e-42 177.6 268 47.0
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 3.8e-42 176.8 270 47.0
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 4.9e-42 176.4 270 47.0
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 6.4e-42 176.0 252 50.0
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 1.1e-41 175.3 273 46.9
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 1.4e-41 174.9 258 50.4
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 1.4e-41 174.9 262 47.3
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 1.4e-41 174.9 254 46.5
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 1.9e-41 174.5 264 47.0
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 1.9e-41 174.5 254 47.2
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 2.5e-41 174.1 264 47.0
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 4.2e-41 173.3 269 48.3
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 4.2e-41 173.3 268 45.9
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 9.3e-41 172.2 261 46.7
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 9.3e-41 172.2 275 45.8
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 1.2e-40 171.8 289 49.5
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 1.2e-40 171.8 267 46.4
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 1.2e-40 171.8 259 47.9
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 1.6e-40 171.4 289 49.8
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 1.6e-40 171.4 274 45.6
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 1.6e-40 171.4 268 47.0
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 2.1e-40 171.0 285 45.3
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 3.5e-40 170.2 268 46.3
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 3.5e-40 170.2 273 46.2
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 6.0e-40 169.5 256 47.7
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 6.0e-40 169.5 273 44.7
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 1.8e-39 167.9 263 47.5
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 1.8e-39 167.9 275 44.0
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.8e-39 167.9 267 44.2
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 2.3e-39 167.5 276 45.3
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 8.7e-39 165.6 255 53.3
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 8.7e-39 165.6 270 44.1
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 2.5e-38 164.1 279 44.8
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 9.6e-38 162.2 262 44.3
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 1.3e-37 161.8 269 44.2
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 2.8e-37 160.6 260 45.8
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 3.7e-37 160.2 252 46.4
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 4.8e-37 159.8 255 49.8
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 6.2e-37 159.5 271 43.9
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 1.1e-36 158.7 273 43.6
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 1.4e-36 158.3 267 45.3
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 1.8e-36 157.9 261 45.2
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 2.4e-36 157.5 282 41.1
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 2.4e-36 157.5 255 49.4
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 3.1e-36 157.1 264 48.5
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 3.1e-36 157.1 269 43.9
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 4.0e-36 156.8 230 58.3
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 5.3e-36 156.4 245 46.9
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 6.9e-36 156.0 247 47.8
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 6.9e-36 156.0 247 47.8
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 9.0e-36 155.6 255 48.6
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 2.0e-35 154.5 272 44.1
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 2.0e-35 154.5 250 45.2
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 3.4e-35 153.7 259 45.6
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 4.5e-35 153.3 263 44.9
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 1.0e-34 152.1 282 40.8
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 1.4e-33 148.3 329 38.6
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 1.9e-33 147.9 263 43.0
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 2.1e-32 144.4 260 43.1
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 4.6e-32 143.3 249 43.0
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 6.1e-32 142.9 255 42.7
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 2.3e-31 141.0 246 43.5
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 3.0e-31 140.6 279 40.5
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 1.1e-30 138.7 252 49.6
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 1.3e-29 135.2 279 40.5
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 1.4e-28 131.7 265 47.2
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 1.4e-28 131.7 253 46.6
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 3.1e-28 130.6 250 45.6
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 4.1e-28 130.2 297 43.8
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 3.4e-27 127.1 258 44.2
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 4.5e-27 126.7 246 41.9
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 3.8e-26 123.6 253 43.1
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 5.0e-26 123.2 197 55.8
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 6.5e-26 122.9 308 39.6
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 1.9e-25 121.3 266 39.1
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 1.9e-25 121.3 266 39.1
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 3.2e-25 120.6 241 45.6
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 3.2e-25 120.6 273 43.6
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 4.2e-25 120.2 220 49.5
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 2.7e-24 117.5 270 40.7
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 3.6e-24 117.1 270 40.7
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.4e-23 115.2 71 83.1
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 5.1e-23 113.2 197 51.8
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 8.8e-23 112.5 296 34.5
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 1.1e-22 112.1 101 62.4
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 1.1e-22 112.1 279 40.1
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 2.0e-22 111.3 253 37.9
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 2.0e-22 111.3 254 38.2
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 1.8e-20 104.8 70 77.1
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 2.1e-16 91.3 105 54.3
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 2.3e-15 87.8 56 76.8
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.1e-14 85.5 56 82.1
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 7.4e-14 82.8 42 95.2
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 7.4e-14 82.8 42 95.2
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 7.4e-14 82.8 42 95.2
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 8.2e-13 79.3 40 95.0
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 1.1e-12 79.0 102 54.9
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 4.1e-12 77.0 339 29.2
SHI02827 Sapria himalayana HOM05D000004 ORTHO05D000002 1.5e-11 75.1 96 41.7
SHI33292 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-11 74.7 96 39.6
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 2.9e-10 70.9 39 82.1
THA.LOC104815241 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.5e-09 68.6 94 36.2
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 5.5e-09 66.6 56 60.7
THA.LOC104801738 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 7.2e-09 66.2 100 37.0
Ca_27235_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.2e-08 65.5 103 34.0
THA.LOC104824625 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.2e-08 65.5 114 37.7
Ca_11127_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 2.1e-08 64.7 93 38.7
THA.LOC104814705 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 2.1e-08 64.7 91 38.5
CsaV3_6G024090 Cucumis sativus L. HOM05D045894 ORTHO05D000002 2.7e-08 64.3 124 31.5
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.6e-08 63.9 91 38.5
Lalb_Chr24g0402721 Lupinus albus HOM05D000004 ORTHO05D000002 4.7e-08 63.5 107 34.6
ClCG02G010850 Citrullus lanatus HOM05D023844 ORTHO05D020470 6.1e-08 63.2 104 38.5
Sp1g30880 Schrenkiella parvula HOM05D000004 ORTHO05D036776 6.1e-08 63.2 104 36.5
Ca_23728_v3 Cicer arietinum L. HOM05D000602 ORTHO05D000002 8.0e-08 62.8 103 34.0
ECA233G0504 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.4e-07 62.0 95 40.0
Nn5g28532 Nelumbo nucifera HOM05D000004 ORTHO05D000002 1.4e-07 62.0 101 38.6
THA.LOC104809111 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.4e-07 62.0 105 37.1
CANSAT54G0404 Cannabis sativa HOM05D000004 ORTHO05D000002 2.3e-07 61.2 178 27.0
Ca_10432_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.3e-07 61.2 91 35.2
Ca_16100_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.3e-07 61.2 99 32.3
ClCG10G008210 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.3e-07 61.2 142 31.7
ECA232G1905 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.3e-07 61.2 136 30.9
Ca_23730_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 6.7e-07 59.7 85 35.3
Ca_05479_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 8.8e-07 59.3 92 33.7
Ca_26814_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 8.8e-07 59.3 98 32.7
ECA248G1389 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-07 59.3 94 39.4
Ca_07639_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.1e-06 58.9 95 37.9
ClCG07G004600 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.1e-06 58.9 111 31.5
TWI60G0240 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 1.1e-06 58.9 118 34.7
TWI60G1032 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 1.1e-06 58.9 118 34.7
Ciclev10024141m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.5e-06 58.5 103 31.1
COL.COLO4_10638 Corchorus olitorius HOM05D000004 ORTHO05D000002 2.0e-06 58.2 108 36.1
SHI09204 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-06 58.2 92 37.0
CiPaw.07G069300 Carya illinoinensis HOM05D000004 ORTHO05D000002 2.6e-06 57.8 116 33.6
Nn5g27772 Nelumbo nucifera HOM05D000004 ORTHO05D000002 2.6e-06 57.8 44 47.7
Nn6g31876 Nelumbo nucifera HOM05D000004 ORTHO05D000002 2.6e-06 57.8 110 30.9
Ca_16129_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 3.3e-06 57.4 102 31.4
Psat5g016360 Pisum sativum HOM05D000004 ORTHO05D000002 3.3e-06 57.4 124 30.6
CANSAT35G1793 Cannabis sativa HOM05D000004 ORTHO05D000002 4.4e-06 57.0 96 35.4
Ca_12309_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 4.4e-06 57.0 121 28.9
Hma1.2p1_0446F.1_g154680 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 4.4e-06 57.0 108 36.1
CiPaw.09G170200 Carya illinoinensis HOM05D000004 ORTHO05D000002 5.7e-06 56.6 126 32.5
COL.COLO4_28806 Corchorus olitorius HOM05D000004 ORTHO05D000002 5.7e-06 56.6 97 33.0
Ca_04544_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 7.4e-06 56.2 102 31.4
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 7.4e-06 56.2 121 28.9
PSO170G5011 Papaver somniferum HOM05D000004 ORTHO05D000002 7.4e-06 56.2 114 28.1
PSO339G3091 Papaver somniferum HOM05D000004 ORTHO05D000002 7.4e-06 56.2 121 31.4
CANSAT35G0070 Cannabis sativa HOM05D000004 ORTHO05D000002 9.7e-06 55.8 130 33.8
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 9.7e-06 55.8 40 65.0


User provided reference genes

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