Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.7e-264 915.6 514 100.0
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.2e-243 844.0 514 90.7
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.4e-239 832.8 514 89.5
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 4.3e-236 821.2 514 88.7
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.2e-233 813.1 510 89.0
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 5.9e-233 810.8 511 88.8
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 5.9e-233 810.8 527 82.2
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 8.5e-232 807.0 514 87.9
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.5e-231 805.4 510 87.8
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 9.4e-231 803.5 510 88.0
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.2e-230 803.1 509 87.0
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 1.4e-229 799.7 514 87.7
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.8e-229 799.3 514 88.1
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.8e-229 799.3 514 88.1
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 3.9e-229 798.1 514 87.2
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 8.8e-229 797.0 513 87.7
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 1.1e-228 796.6 513 87.7
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 2.5e-228 795.4 511 86.9
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 3.3e-228 795.0 513 87.5
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 7.4e-228 793.9 514 87.4
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 9.7e-228 793.5 514 87.2
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 1.8e-226 789.3 514 85.6
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 1.8e-226 789.3 514 86.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.8e-226 789.3 513 86.0
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.4e-226 788.9 514 85.6
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 3.1e-226 788.5 513 86.2
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 5.3e-226 787.7 511 85.9
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 6.9e-226 787.3 513 87.1
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.5e-225 786.2 514 85.8
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.0e-225 785.8 542 83.8
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.7e-225 783.9 514 85.2
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.5e-223 778.9 512 85.5
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 2.5e-223 778.9 514 85.6
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 4.2e-223 778.1 514 85.8
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 5.5e-223 777.7 514 81.3
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 5.5e-223 777.7 514 84.2
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 7.2e-223 777.3 513 85.8
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 2.7e-222 775.4 512 86.5
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 2.7e-222 775.4 536 82.5
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 6.1e-222 774.2 514 84.0
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.0e-221 773.5 514 86.6
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.4e-221 773.1 514 84.6
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.4e-221 773.1 513 85.2
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.4e-221 773.1 510 85.7
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.4e-221 773.1 510 86.1
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.8e-221 772.7 514 84.2
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.8e-221 772.7 504 87.1
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.3e-221 772.3 514 84.0
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 3.0e-221 771.9 511 82.2
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.1e-220 770.0 514 83.5
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 1.1e-220 770.0 514 84.6
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.5e-220 769.6 513 84.6
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 2.6e-220 768.8 514 83.9
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 3.3e-220 768.5 514 84.6
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 5.7e-220 767.7 511 84.9
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 5.7e-220 767.7 511 84.7
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 7.4e-220 767.3 512 84.2
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.7e-219 766.1 514 83.7
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.8e-219 765.4 514 84.2
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 2.8e-219 765.4 514 82.3
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 2.4e-218 762.3 514 82.9
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 9.1e-218 760.4 513 84.0
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.2e-217 760.0 504 84.7
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 1.5e-217 759.6 514 84.4
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 3.5e-217 758.4 504 83.5
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 4.5e-217 758.1 514 82.7
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 4.5e-217 758.1 512 83.6
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 5.9e-217 757.7 512 85.7
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 5.9e-217 757.7 511 83.2
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 5.9e-217 757.7 514 83.3
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.0e-216 756.9 513 82.7
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 2.2e-216 755.7 511 84.5
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 2.9e-216 755.4 504 84.5
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 3.8e-216 755.0 514 83.3
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 7.2e-215 750.7 514 82.9
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 9.4e-215 750.4 511 83.0
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 9.4e-215 750.4 514 82.7
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.2e-214 750.0 511 83.4
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 2.7e-214 748.8 514 83.5
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 3.6e-214 748.4 511 81.6
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.4e-213 746.5 509 83.3
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.4e-213 746.5 509 83.3
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 1.4e-213 746.5 514 83.3
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 2.3e-213 745.7 511 83.0
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 3.0e-213 745.3 512 82.6
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 8.8e-213 743.8 535 76.4
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 8.2e-211 737.3 514 81.1
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.8e-210 736.1 500 82.0
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.6e-209 733.0 551 74.0
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.6e-209 732.3 514 82.5
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 3.5e-209 731.9 515 80.6
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.0e-208 730.3 485 86.0
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.2e-207 725.3 509 82.7
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 7.2e-207 724.2 507 79.9
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 8.0e-206 720.7 520 80.4
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.2e-201 706.8 484 84.5
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.9e-200 702.2 514 77.8
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 1.1e-199 700.3 535 75.3
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.1e-199 700.3 514 75.5
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 4.2e-199 698.4 468 87.8
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 7.2e-199 697.6 557 72.7
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 1.6e-198 696.4 511 78.7
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 8.8e-197 690.6 514 76.3
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.3e-192 676.8 464 84.7
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 9.5e-191 670.6 525 76.0
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 3.0e-189 665.6 511 66.9
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.5e-188 663.3 513 78.0
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.0e-181 640.6 435 83.0
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 8.6e-176 620.9 430 84.4
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.2e-174 617.1 428 82.2
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 8.1e-166 587.8 518 67.6
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.1e-157 560.8 414 79.7
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 2.7e-153 546.2 511 63.0
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.2e-145 520.8 268 96.6
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 7.1e-138 495.0 322 89.1
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 4.2e-130 469.2 254 90.6
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 3.7e-126 456.1 331 78.9
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 7.4e-119 431.8 384 63.8
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 3.9e-104 382.9 210 91.9
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 8.8e-104 381.7 210 91.4
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 6.7e-96 355.5 207 97.1
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 5.7e-95 352.4 365 68.5
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.6e-76 291.2 517 43.9
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 9.5e-74 282.0 257 66.5
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 3.2e-61 240.4 134 91.0
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 3.0e-59 233.8 526 34.4
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 3.7e-54 216.9 253 43.9
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 1.1e-45 188.7 99 85.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.7e-44 184.1 150 65.3
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 3.2e-37 160.6 80 92.5
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 3.3e-34 150.6 295 32.9
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-33 147.9 137 65.0
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.4e-32 145.2 80 88.8
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 5.8e-31 139.8 107 70.1
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 1.7e-30 138.3 178 48.3
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.0e-27 129.0 70 87.1
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 3.9e-27 127.1 100 62.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 3.9e-27 127.1 100 62.0
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 3.3e-26 124.0 69 87.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 2.8e-25 120.9 64 87.5
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 2.8e-25 120.9 64 87.5
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.2e-20 105.5 56 83.9
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-17 95.5 56 75.0
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 2.8e-17 94.4 47 91.5
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.4e-16 92.0 47 97.9
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 6.5e-14 83.2 41 87.8
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.5e-13 80.1 122 40.2
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 1.2e-12 79.0 41 82.9
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.8e-11 75.1 134 54.5
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.5e-10 72.0 36 86.1
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 2.5e-10 71.2 105 42.9
HanXRQChr07g0191341 Helianthus annuus HOM05D004842 ORTHO05D219428 1.2e-07 62.4 38 71.1
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 4.5e-07 60.5 35 74.3
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 7.6e-07 59.7 308 31.8
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 5.0e-06 57.0 74 51.4
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 8.5e-06 56.2 29 79.3


User provided reference genes

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