Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 2174.8 1208 100.0
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1628.6 1212 76.7
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1605.1 1216 75.2
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1597.4 1224 73.9
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1594.7 1219 73.0
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1593.9 1225 72.8
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1591.2 1214 72.8
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1585.9 1216 72.7
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1567.7 1218 72.2
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1565.8 1268 70.4
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1565.4 1217 72.6
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1562.0 1212 72.1
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1562.0 1218 71.3
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1560.4 1215 71.9
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1559.3 1219 71.4
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1558.9 1209 73.0
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1558.5 1194 72.6
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1552.3 1216 72.0
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1549.6 1209 71.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1548.1 1218 70.1
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1547.7 1216 70.9
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1545.0 1210 71.1
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1542.7 1235 70.4
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1539.6 1189 71.7
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1533.5 1218 71.5
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1533.5 1254 68.9
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1532.3 1204 71.2
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1531.9 1207 71.2
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1528.1 1215 70.4
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1527.3 1211 70.8
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1526.5 1235 70.2
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1523.8 1219 71.1
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1523.8 1218 70.1
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1523.1 1236 70.1
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1522.7 1234 68.5
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1520.4 1222 68.9
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1520.0 1214 71.1
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1520.0 1216 71.3
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1518.4 1195 71.7
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1517.3 1220 68.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1513.8 1217 69.1
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1512.3 1219 69.8
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1511.9 1219 70.1
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1511.5 1156 74.0
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1509.6 1197 71.2
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1508.4 1227 68.8
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1505.0 1183 71.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1504.2 1218 69.3
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1504.2 1194 70.4
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1502.6 1199 70.7
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1500.0 1195 70.7
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1498.8 1221 69.5
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1496.9 1202 69.6
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1496.5 1216 70.6
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1496.5 1206 69.4
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1495.3 1213 70.2
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1477.2 1218 67.8
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1476.8 1249 67.7
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1471.1 1211 67.5
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1469.9 1224 68.5
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1463.7 1204 66.1
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1462.6 1137 70.4
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1460.3 1194 69.8
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1459.9 1207 67.9
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1457.6 1209 66.7
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1456.4 1241 65.8
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1455.3 1076 74.8
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1450.6 1224 66.3
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1448.7 1211 69.0
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1442.2 1240 67.1
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1439.5 1218 65.2
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1439.5 1218 65.2
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1438.7 1223 64.9
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1438.3 1197 65.9
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1435.6 1218 65.1
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1432.2 1194 68.0
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1429.5 1177 66.4
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1427.2 1239 64.8
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1423.7 1191 68.3
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1421.8 1202 67.1
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1419.1 1229 64.8
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1418.3 1305 64.2
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1418.3 1213 66.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1416.4 1215 66.3
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1416.0 1190 66.6
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1414.4 1225 64.5
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1414.1 1217 65.8
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1414.1 1221 66.0
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1412.5 1201 67.4
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1410.6 1220 65.7
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1407.9 1405 60.6
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1407.1 1224 65.4
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1385.2 1185 66.2
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1366.7 895 77.2
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1365.9 1221 63.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1353.2 1198 61.5
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1350.9 1216 65.0
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1345.5 942 76.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1343.9 1205 65.6
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1343.9 1205 63.7
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1342.8 1225 62.8
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1311.2 884 77.9
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1262.3 1287 57.3
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1207.6 852 75.4
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1203.0 797 80.6
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1153.3 1221 55.6
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1105.5 765 77.1
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1092.4 809 70.0
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 6.3e-270 934.9 915 64.0
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.0e-264 915.6 814 67.3
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 1.9e-258 896.7 981 56.7
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 9.5e-242 841.3 675 68.4
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 2.7e-228 796.6 946 57.4
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-195 688.0 607 65.1
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.3e-182 644.8 544 63.1
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 9.7e-170 602.1 955 39.9
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 3.6e-164 583.6 404 72.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.5e-162 578.2 377 75.9
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.2e-153 547.7 288 93.4
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 6.8e-123 446.4 1161 30.8
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 2.2e-121 441.4 302 74.8
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 3.6e-116 424.1 237 84.4
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.3e-110 405.6 313 67.4
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.5e-106 392.1 450 55.6
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 5.8e-106 390.2 839 35.8
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 8.1e-92 343.2 651 39.0
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 2.0e-90 338.6 1298 27.3
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.9e-89 334.0 215 80.0
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.4e-88 331.6 215 79.5
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 7.1e-88 330.1 212 76.4
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 6.0e-87 327.0 181 86.2
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 6.0e-87 327.0 181 86.2
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-86 326.2 378 56.1
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 3.7e-84 317.8 174 86.8
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 3.3e-77 294.7 224 66.1
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 6.7e-70 270.4 361 47.4
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.9e-64 252.3 399 44.4
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.0e-58 232.3 206 72.8
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-57 229.6 165 70.9
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 2.9e-57 228.4 129 89.9
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 2.5e-56 225.3 374 47.1
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 8.0e-55 220.3 358 49.4
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.0e-54 218.4 155 72.9
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.3e-53 214.9 138 75.4
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 2.6e-50 205.3 330 40.3
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.5e-50 204.9 330 47.3
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.2e-39 169.9 120 66.7
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 3.4e-37 161.8 321 34.9
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.4e-35 156.4 90 85.6
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.0e-33 150.2 83 89.2
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.5e-32 144.4 90 78.9
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 7.2e-32 144.1 77 88.3
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 6.8e-30 137.5 134 57.5
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 1.1e-27 130.2 119 66.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.5e-26 124.8 155 52.3
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-24 120.2 73 75.3
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 7.3e-24 117.5 87 63.2
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 2.6e-21 109.0 65 87.7
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 2.6e-21 109.0 72 75.0
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 7.5e-21 107.5 209 43.1
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.4e-19 103.2 83 57.8
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.4e-19 102.4 110 53.6
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-18 99.8 77 64.9
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.7e-18 99.0 94 58.5
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.3e-17 96.7 68 67.6
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 8.6e-17 94.0 57 73.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 1.1e-16 93.6 56 73.2
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.5e-16 93.2 59 79.7
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 3.6e-15 88.6 126 45.2
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.2e-13 83.6 98 60.2
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 4.9e-12 78.2 56 64.3
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 3.5e-10 72.0 46 78.3
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 1.7e-09 69.7 50 68.0
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 3.0e-09 68.9 113 43.4
Hma1.2p1_0786F.1_g217640 Hydrangea macrophylla HOM05D003924 ORTHO05D228318 8.6e-09 67.4 50 66.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.3e-08 65.5 45 66.7
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 8.1e-07 60.8 151 32.5
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 5.2e-06 58.2 47 48.9


User provided reference genes

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