Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 1.8e-63 245.7 125 100.0
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 5.9e-62 240.7 125 96.8
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 1.0e-61 240.0 125 96.8
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 1.3e-61 239.6 125 96.8
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 1.3e-61 239.6 125 96.0
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 6.5e-61 237.3 125 95.2
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 1.4e-60 236.1 125 95.2
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 1.4e-60 236.1 125 95.2
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 93.6
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 93.6
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 94.4
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 94.4
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 94.4
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 4.2e-60 234.6 123 94.3
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 93.6
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 93.6
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 4.2e-60 234.6 126 96.0
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 92.8
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 5.5e-60 234.2 123 94.3
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 7.2e-60 233.8 125 94.4
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 9.4e-60 233.4 125 96.0
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 9.4e-60 233.4 125 92.8
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 9.4e-60 233.4 125 92.8
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 1.2e-59 233.0 125 92.8
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 1.2e-59 233.0 125 92.8
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 1.2e-59 233.0 125 92.8
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 1.2e-59 233.0 124 92.7
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.2e-59 233.0 125 92.8
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 1.6e-59 232.6 123 93.5
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.6e-59 232.6 124 92.7
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 1.6e-59 232.6 125 93.6
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 1.6e-59 232.6 125 92.8
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 92.8
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 2.7e-59 231.9 123 92.7
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 2.7e-59 231.9 125 92.8
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 3.6e-59 231.5 125 91.2
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 3.6e-59 231.5 123 92.7
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 3.6e-59 231.5 125 92.0
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 3.6e-59 231.5 125 92.0
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 92.0
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 92.0
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 91.2
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 6.1e-59 230.7 125 92.8
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 8.0e-59 230.3 125 91.2
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 8.0e-59 230.3 123 93.5
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 8.0e-59 230.3 125 91.2
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 1.0e-58 229.9 125 92.0
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 1.4e-58 229.6 126 92.9
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 1.4e-58 229.6 126 92.9
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 1.4e-58 229.6 125 92.0
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 1.4e-58 229.6 123 91.9
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 1.8e-58 229.2 125 92.0
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 2.3e-58 228.8 127 91.3
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 2.3e-58 228.8 123 91.9
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 5.2e-58 227.6 125 91.2
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 5.2e-58 227.6 125 91.2
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 90.4
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 6.7e-58 227.3 128 89.1
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 92.0
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 92.0
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 90.4
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 90.4
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 90.4
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 91.2
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 91.2
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 4.4e-57 224.6 122 91.0
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 4.4e-57 224.6 126 90.5
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 4.4e-57 224.6 116 96.6
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 5.7e-57 224.2 119 92.4
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 7.4e-57 223.8 123 87.8
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 9.7e-57 223.4 120 91.7
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 9.7e-57 223.4 121 90.9
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 87.2
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 90.4
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 1.3e-56 223.0 123 89.4
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 1.3e-56 223.0 123 89.4
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 1.3e-56 223.0 128 87.5
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 2.2e-56 222.2 123 88.6
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 88.0
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 3.7e-56 221.5 124 87.1
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 88.6
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 88.6
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 6.3e-56 220.7 125 88.0
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 6.3e-56 220.7 125 88.0
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 6.3e-56 220.7 125 88.0
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 6.3e-56 220.7 125 88.0
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 6.3e-56 220.7 125 88.0
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 6.3e-56 220.7 129 85.3
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.1e-55 219.9 125 87.2
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 1.1e-55 219.9 117 91.5
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 1.4e-55 219.5 125 86.4
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 1.4e-55 219.5 125 86.4
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 1.4e-55 219.5 119 89.1
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 87.2
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 2.4e-55 218.8 128 85.2
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 2.4e-55 218.8 128 85.2
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 3.1e-55 218.4 125 87.2
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 3.1e-55 218.4 125 87.2
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 3.1e-55 218.4 116 93.1
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 5.3e-55 217.6 116 93.1
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 5.3e-55 217.6 116 90.5
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 1.6e-54 216.1 125 86.4
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 2.6e-54 215.3 128 85.9
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 5.0e-53 211.1 122 83.6
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 6.5e-53 210.7 118 85.6
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 6.5e-53 210.7 122 83.6
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 6.5e-53 210.7 122 83.6
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 8.5e-53 210.3 125 85.6
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 5.5e-52 207.6 125 82.4
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 6.1e-51 204.1 115 87.0
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 4.8e-48 194.5 125 73.6
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.1e-47 193.4 139 72.7
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 3.5e-46 188.3 115 80.0
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.9e-45 185.3 116 75.9
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 1.5e-44 183.0 106 85.8
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 7.2e-44 180.6 122 72.1
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 1.3e-40 169.9 85 96.5
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 1.6e-38 162.9 93 82.8
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 3.6e-35 151.8 91 83.5
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 1.2e-30 136.7 113 58.4
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 5.0e-29 131.3 113 50.4
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 7.0e-23 110.9 70 71.4
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 7.3e-20 100.9 96 56.2
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 1.9e-15 86.3 42 95.2
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 4.6e-14 81.6 77 57.1
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 1.4e-07 60.1 120 36.7
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 2.4e-07 59.3 84 39.3
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 5.4e-07 58.2 103 34.0
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 5.4e-07 58.2 31 83.9
MBI14_g02603_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.6e-06 56.6 95 36.8
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 2.7e-06 55.8 86 33.7
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 3.5e-06 55.5 86 36.0
Glyma.19G188700 Glycine max HOM05D000428 ORTHO05D000582 3.5e-06 55.5 85 37.6
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.5e-06 55.5 95 36.8
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 4.6e-06 55.1 95 34.7
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 4.6e-06 55.1 95 34.7
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 4.6e-06 55.1 92 32.6
HanXRQChr10g0299291 Helianthus annuus HOM05D001413 ORTHO05D001385 4.6e-06 55.1 87 35.6
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 6.0e-06 54.7 96 33.3
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 6.0e-06 54.7 87 39.1
AL1G12240 Arabidopsis lyrata HOM05D001413 ORTHO05D001385 7.8e-06 54.3 74 35.1
A02p24730 Brassica napus HOM05D001413 ORTHO05D001385 7.8e-06 54.3 74 36.5
Rhsim07G0190000 Rhododendron simsii HOM05D001413 ORTHO05D001385 7.8e-06 54.3 86 37.2
SGA_v2.0_scaffold146G36114 Striga asiatica HOM05D002411 ORTHO05D002564 7.8e-06 54.3 80 35.0


User provided reference genes

Program Settings