Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 1.3e-240 836.3 514 100.0
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.0e-225 785.8 514 92.8
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 7.7e-225 783.9 514 92.8
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.2e-224 782.3 514 91.4
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 6.5e-224 780.8 512 92.6
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 8.5e-224 780.4 514 92.4
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 1.1e-223 780.0 514 91.8
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 1.2e-222 776.5 514 91.1
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.6e-222 776.2 514 86.6
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 7.9e-222 773.9 513 92.0
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.3e-221 772.3 514 92.0
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.1e-220 770.0 513 91.0
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.3e-219 766.5 514 90.1
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 8.2e-219 763.8 514 90.7
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 8.2e-219 763.8 514 91.4
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.1e-218 763.5 514 91.4
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 4.1e-218 761.5 514 89.1
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 7.0e-218 760.8 513 88.7
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 9.1e-218 760.4 513 88.7
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 1.5e-217 759.6 514 88.1
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.6e-217 758.8 514 84.4
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 2.6e-217 758.8 513 88.5
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.0e-216 756.9 514 87.5
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.0e-216 756.9 514 88.9
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 1.7e-216 756.1 514 89.1
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 2.2e-216 755.7 514 89.9
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 2.9e-216 755.4 514 84.8
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.8e-216 755.0 514 89.3
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 6.5e-216 754.2 514 87.4
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.1e-215 753.4 511 89.8
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.1e-215 753.4 514 89.3
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 1.4e-215 753.1 511 88.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.4e-215 753.1 514 88.7
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 2.5e-215 752.3 514 88.9
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.6e-214 749.6 514 88.9
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 3.6e-214 748.4 512 88.7
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 4.7e-214 748.0 511 89.0
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 8.0e-214 747.3 513 86.7
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 8.0e-214 747.3 512 88.7
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.4e-213 746.5 504 89.5
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.8e-213 746.1 513 87.1
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.8e-213 746.1 513 88.9
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.8e-213 746.1 511 84.7
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 2.3e-213 745.7 512 89.1
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 3.9e-213 745.0 514 87.9
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 6.7e-213 744.2 509 85.9
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 8.8e-213 743.8 514 84.4
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.1e-212 743.4 514 88.1
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.1e-212 743.4 514 88.3
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.1e-212 743.4 511 89.4
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.5e-212 743.0 509 88.6
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.5e-212 743.0 509 89.0
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.5e-212 743.0 514 86.6
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 3.3e-212 741.9 511 89.2
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 4.4e-212 741.5 511 89.8
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 4.4e-212 741.5 509 84.7
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 4.4e-212 741.5 509 84.9
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 5.7e-212 741.1 509 83.7
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 9.7e-212 740.3 513 87.9
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 9.7e-212 740.3 514 87.4
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 2.2e-211 739.2 504 89.1
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 4.8e-211 738.0 514 87.5
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.1e-210 736.9 514 86.0
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 1.8e-210 736.1 513 87.5
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 2.4e-210 735.7 512 83.0
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 4.1e-210 734.9 527 77.0
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 9.1e-210 733.8 514 87.9
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 9.1e-210 733.8 514 88.5
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 1.6e-209 733.0 504 86.5
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 2.6e-209 732.3 512 85.7
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 5.9e-209 731.1 504 87.9
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 1.0e-208 730.3 507 87.8
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.5e-207 726.5 512 80.9
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.5e-207 726.5 513 82.3
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 1.5e-207 726.5 514 82.9
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 5.5e-207 724.5 512 81.6
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.2e-206 723.4 514 82.5
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.2e-206 723.4 514 82.5
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.8e-205 719.5 534 80.3
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 4.0e-205 718.4 512 83.4
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 4.0e-205 718.4 516 84.9
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 6.8e-205 717.6 512 84.0
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.5e-204 716.5 514 86.8
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 5.7e-204 714.5 510 83.9
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 5.7e-204 714.5 510 83.9
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 9.7e-204 713.8 512 83.8
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.7e-203 713.0 542 78.6
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-201 706.1 485 88.7
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 5.9e-201 704.5 508 86.8
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.7e-200 703.0 500 83.8
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.1e-199 700.3 514 80.9
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.5e-199 699.1 514 74.5
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.2e-199 698.7 514 82.9
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.2e-199 698.4 514 81.1
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 8.0e-198 694.1 557 77.9
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 8.8e-197 690.6 514 75.5
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 1.3e-195 686.8 520 81.0
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 6.3e-195 684.5 512 83.4
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 4.1e-194 681.8 464 93.1
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 9.1e-194 680.6 535 78.5
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 8.6e-192 674.1 484 86.2
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 4.2e-191 671.8 514 80.5
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.7e-187 659.8 551 69.3
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 2.2e-187 659.4 512 73.0
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 1.1e-186 657.1 525 79.2
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 4.5e-185 651.7 468 87.6
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.7e-182 641.7 513 81.7
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.8e-173 613.2 435 85.1
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.9e-171 605.9 430 89.8
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 2.5e-167 592.8 428 86.2
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.2e-158 563.9 414 87.0
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 4.2e-154 548.9 512 69.3
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 6.2e-150 535.0 511 66.5
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 7.9e-137 491.5 269 90.0
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 1.9e-127 460.3 254 90.6
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 4.2e-122 442.6 312 81.1
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.2e-118 430.3 322 82.3
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 3.3e-111 406.4 385 60.3
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 3.7e-102 376.3 210 91.4
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 8.2e-102 375.2 210 91.0
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 8.0e-89 332.0 365 73.7
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 9.8e-71 271.9 518 48.3
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.3e-70 271.6 257 76.3
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 1.4e-64 251.5 175 85.1
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 1.4e-61 241.5 134 93.3
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 4.6e-60 236.5 527 34.7
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 1.1e-45 188.7 99 85.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.5e-39 168.3 104 77.9
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 2.6e-39 167.5 254 39.4
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 5.1e-35 153.3 80 87.5
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 8.1e-33 146.0 80 91.2
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.4e-32 145.2 137 63.5
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 2.4e-32 144.4 237 44.7
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 2.2e-30 137.9 107 69.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.0e-27 129.0 70 90.0
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 6.6e-27 126.3 295 30.5
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 5.6e-26 123.2 69 87.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 4.8e-25 120.2 64 87.5
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 4.8e-25 120.2 64 87.5
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.7e-20 104.4 56 82.1
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 3.0e-19 100.9 54 79.6
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.8e-17 93.6 47 100.0
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 6.2e-17 93.2 47 87.2
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 3.4e-15 87.4 74 58.1
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 3.4e-15 87.4 74 58.1
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.1e-13 82.4 41 87.8
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 2.1e-12 78.2 41 82.9
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.1e-11 73.6 121 39.7
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 8.7e-11 72.8 36 83.3
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 9.6e-10 69.3 105 41.0
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 3.4e-07 60.8 35 77.1
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 4.5e-07 60.5 134 70.1
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.3e-06 58.9 29 82.8


User provided reference genes

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