Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 2.3e-182 642.1 328 100.0
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 4.0e-118 428.7 325 66.8
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 5.8e-117 424.9 327 66.7
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.7e-116 423.3 323 67.8
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.1e-115 420.6 326 65.6
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.4e-115 419.5 323 65.6
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.4e-115 419.5 328 64.9
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 7.1e-115 417.9 323 65.3
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.7e-113 413.3 327 63.9
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 5.1e-113 411.8 325 63.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.1e-112 410.6 341 63.6
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.5e-112 409.5 327 64.8
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.3e-112 408.7 325 65.2
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 4.3e-112 408.7 320 66.9
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.2e-111 407.1 323 64.4
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.6e-111 406.8 318 64.8
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 2.1e-111 406.4 329 65.0
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.8e-111 406.0 325 63.1
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.1e-110 404.1 327 64.8
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.4e-110 403.7 331 62.5
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.3e-110 402.9 325 64.6
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 3.1e-110 402.5 327 63.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 3.1e-110 402.5 324 63.6
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 8.9e-110 401.0 326 63.5
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.2e-109 400.6 326 63.2
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 3.4e-109 399.1 323 64.1
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 4.4e-109 398.7 329 62.9
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 5.8e-109 398.3 320 64.4
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.8e-109 398.3 324 63.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 5.8e-109 398.3 332 63.0
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 9.9e-109 397.5 324 62.3
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 9.9e-109 397.5 325 62.5
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.3e-108 397.1 328 63.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.7e-108 396.7 323 64.7
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.2e-108 396.4 328 61.3
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 2.2e-108 396.4 324 62.3
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 8.4e-108 394.4 293 68.3
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 8.4e-108 394.4 328 61.3
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 8.4e-108 394.4 323 62.8
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.9e-107 393.3 324 62.3
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.9e-107 393.3 323 61.6
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.4e-107 392.9 326 62.3
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.4e-107 391.7 330 63.3
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.2e-107 391.0 330 63.3
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.2e-106 390.6 323 62.2
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 2.1e-106 389.8 326 63.2
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.7e-106 389.4 330 62.7
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.7e-106 389.4 354 58.5
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.7e-106 389.4 326 63.2
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 3.5e-106 389.0 323 63.2
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.5e-106 389.0 323 61.0
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 4.6e-106 388.7 330 63.0
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 4.6e-106 388.7 326 62.6
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.0e-105 387.5 323 61.3
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.3e-105 387.1 329 60.2
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-105 386.7 330 62.7
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.7e-105 386.7 326 59.8
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.3e-105 386.3 323 61.3
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.3e-105 386.3 326 60.4
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 6.6e-105 384.8 327 60.6
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.9e-104 383.3 350 58.3
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 2.5e-104 382.9 333 60.4
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 2.5e-104 382.9 327 59.6
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 2.5e-104 382.9 324 61.7
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 3.3e-104 382.5 323 61.6
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 5.6e-104 381.7 326 59.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 5.6e-104 381.7 326 58.6
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.6e-104 381.7 323 60.1
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 7.3e-104 381.3 370 56.5
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 9.6e-104 380.9 326 59.5
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 9.6e-104 380.9 326 58.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 9.6e-104 380.9 323 60.1
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 9.6e-104 380.9 288 67.4
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.2e-103 380.6 328 60.7
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 1.2e-103 380.6 329 61.1
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.2e-103 380.6 324 62.3
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 2.8e-103 379.4 330 60.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 6.2e-103 378.3 324 61.7
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-102 377.5 322 59.9
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.8e-102 376.7 326 59.2
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.4e-102 376.3 321 59.8
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 3.1e-102 375.9 327 59.9
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.0e-102 375.6 326 58.3
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 5.2e-102 375.2 323 60.1
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.2e-101 374.0 327 59.0
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.5e-101 373.6 327 59.0
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.5e-101 373.6 396 52.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.0e-101 373.2 327 58.4
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.6e-101 372.9 326 58.0
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.8e-101 371.7 327 58.7
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 9.9e-101 370.9 326 59.2
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.3e-100 370.5 328 58.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.8e-100 369.0 337 57.3
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 3.2e-99 365.9 327 58.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 5.4e-99 365.2 326 57.1
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 9.3e-99 364.4 326 58.0
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 9.3e-99 364.4 328 60.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.6e-98 363.6 327 58.4
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.7e-97 360.1 269 68.0
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.3e-95 354.0 320 57.5
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.6e-95 352.4 324 58.3
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 8.1e-95 351.3 323 55.4
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 4.0e-94 349.0 324 57.4
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 4.2e-91 339.0 324 58.0
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.5e-88 330.5 323 54.8
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.5e-88 329.7 333 52.6
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.4e-83 313.2 334 51.8
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 3.2e-83 312.8 325 52.3
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 3.1e-78 296.2 331 50.8
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 3.1e-78 296.2 313 51.1
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 2.0e-77 293.5 333 50.8
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 7.6e-77 291.6 311 49.5
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.1e-74 283.5 288 53.8
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.7e-73 278.5 313 50.2
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 4.8e-71 272.3 328 48.2
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 1.5e-69 267.3 286 48.3
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.4e-69 266.2 327 49.2
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.8e-68 262.7 249 55.8
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.6e-66 257.3 177 73.4
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 2.9e-60 236.5 194 59.3
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.3e-57 226.9 211 56.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.1e-56 224.6 289 44.3
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 2.2e-52 210.3 268 46.6
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.6e-50 204.1 184 57.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.1e-50 203.8 202 55.0
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.0e-49 201.4 327 40.7
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.8e-49 200.7 137 72.3
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.7e-49 198.7 325 39.1
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.2e-45 188.0 279 39.1
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.0e-45 187.2 182 51.6
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.9e-43 180.6 159 57.2
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 2.1e-42 177.2 131 66.4
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 3.6e-42 176.4 133 66.9
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 6.1e-42 175.6 139 62.6
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.0e-41 172.9 131 65.6
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.2e-41 172.6 281 36.7
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.4e-38 164.5 170 49.4
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.1e-38 163.3 205 47.3
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.9e-35 154.1 139 57.6
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 4.2e-35 152.9 128 61.7
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 5.7e-32 142.5 152 53.3
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.2e-31 140.6 150 46.7
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.5e-29 133.3 176 40.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 3.5e-29 133.3 116 56.9
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.5e-29 132.9 91 70.3
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 7.7e-29 132.1 139 48.9
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 8.5e-28 128.6 175 41.7
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.2e-26 124.8 119 53.8
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.6e-26 124.4 81 69.1
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.7e-26 122.9 148 43.9
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 2.0e-24 117.5 131 48.9
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 8.3e-23 112.1 117 49.6
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.4e-16 90.1 59 72.9
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 2.9e-15 87.0 192 35.4
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.9e-11 74.3 90 43.3
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.9e-11 74.3 90 43.3
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 4.3e-11 73.2 74 48.6
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 4.4e-08 63.2 121 38.0
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-06 58.5 55 52.7


User provided reference genes

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