Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 0.0e+00 1245.3 626 100.0
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 6.7e-239 830.9 632 65.0
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.5e-238 829.7 632 64.7
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 6.2e-237 824.3 632 65.7
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 6.5e-234 814.3 632 64.9
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 6.5e-234 814.3 665 61.5
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 2.7e-232 808.9 633 64.0
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 6.0e-232 807.7 632 63.8
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 7.9e-232 807.4 614 66.9
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 7.9e-232 807.4 640 63.3
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 1.3e-231 806.6 632 65.0
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 3.0e-231 805.4 630 62.9
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 1.1e-230 803.5 632 62.3
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 1.5e-230 803.1 631 63.5
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 1.5e-230 803.1 630 63.2
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 1.9e-230 802.7 632 63.1
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 3.3e-230 802.0 633 63.3
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 5.7e-230 801.2 632 63.8
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 2.8e-229 798.9 632 63.0
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 3.7e-229 798.5 632 63.3
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 6.3e-229 797.7 631 63.9
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 1.1e-228 797.0 632 63.0
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 4.1e-228 795.0 630 62.1
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 5.3e-228 794.7 632 62.5
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 2.6e-227 792.3 632 63.9
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 2.6e-227 792.3 632 63.3
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 2.6e-227 792.3 607 65.2
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 1.3e-226 790.0 629 63.1
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 2.2e-226 789.3 634 62.5
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 1.1e-225 786.9 630 62.5
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 1.4e-225 786.6 632 61.6
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 1.4e-225 786.6 632 62.0
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 1.4e-225 786.6 632 61.4
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 1.9e-225 786.2 635 62.4
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 2.5e-225 785.8 631 61.8
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 3.5e-224 781.9 632 61.2
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 4.6e-224 781.6 631 63.4
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 5.1e-223 778.1 630 62.2
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 6.7e-223 777.7 723 56.6
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 1.1e-222 776.9 633 62.1
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 3.3e-222 775.4 630 61.9
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 9.7e-222 773.9 639 61.0
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.8e-221 771.5 632 60.1
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 1.1e-220 770.4 632 60.0
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 4.5e-219 765.0 633 60.5
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 6.5e-218 761.1 630 59.8
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 4.2e-217 758.4 630 59.4
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 2.7e-216 755.7 630 60.3
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 4.6e-216 755.0 630 60.2
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 6.1e-216 754.6 630 59.8
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 1.0e-215 753.8 631 60.2
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 1.8e-215 753.1 634 59.6
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 2.3e-215 752.7 629 59.8
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 3.0e-215 752.3 631 59.6
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 3.0e-215 752.3 633 59.6
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 2.2e-213 746.1 632 60.1
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 6.3e-213 744.6 635 59.4
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 1.1e-212 743.8 630 59.2
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 1.4e-212 743.4 629 60.1
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 7.7e-211 737.6 632 59.7
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 3.8e-210 735.3 630 59.5
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 2.8e-205 719.2 591 61.3
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 7.0e-204 714.5 640 58.1
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.5e-201 706.8 633 57.2
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 3.2e-201 705.7 633 57.3
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.6e-200 703.4 643 55.7
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.6e-200 703.4 645 56.3
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 3.0e-199 699.1 630 56.8
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 1.1e-198 697.2 646 56.3
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 7.2e-193 677.9 632 57.8
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 1.2e-192 677.2 590 59.8
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 2.1e-192 676.4 629 56.3
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 6.1e-192 674.9 647 54.3
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.3e-189 667.2 611 56.1
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 1.3e-189 667.2 494 65.8
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 2.7e-187 659.4 630 56.2
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.1e-185 654.1 740 49.9
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 4.6e-171 605.5 626 52.7
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 3.0e-170 602.8 627 50.9
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.6e-168 597.0 592 53.5
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.3e-165 587.4 640 50.3
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 2.1e-160 570.1 653 50.2
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.1e-159 566.2 568 51.1
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 4.9e-157 558.9 568 50.5
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 2.2e-149 533.5 628 46.2
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 1.1e-148 531.2 403 64.5
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 2.1e-147 526.9 442 61.8
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 8.7e-130 468.4 632 42.1
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 1.5e-129 467.6 443 56.9
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 3.4e-126 456.4 631 42.9
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 3.8e-117 426.4 626 41.7
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 5.7e-113 412.5 312 65.1
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 7.4e-113 412.1 547 44.4
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 2.3e-106 390.6 293 66.2
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 7.2e-100 369.0 295 63.1
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 3.0e-98 363.6 282 63.1
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 5.7e-97 359.4 389 49.6
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 1.4e-95 354.8 272 64.3
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 4.5e-86 323.2 248 61.7
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 3.7e-80 303.5 233 64.4
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 2.3e-74 284.3 229 63.8
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 7.5e-73 279.3 241 59.3
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 5.0e-69 266.5 250 55.6
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 2.9e-61 240.7 244 53.7
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 8.0e-59 232.6 703 27.7
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 8.0e-51 206.1 158 62.7
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 2.0e-49 201.4 183 59.6
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 2.5e-44 184.5 172 54.1
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 5.6e-44 183.3 169 59.8
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 2.9e-40 171.0 605 25.8
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 3.7e-40 170.6 177 52.0
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 2.4e-39 167.9 138 65.9
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 4.0e-34 150.6 136 59.6
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.9e-29 134.0 106 57.5
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 3.1e-26 124.4 664 24.7
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 6.9e-26 123.2 121 53.7
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.4e-23 115.5 73 68.5
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 8.1e-19 99.8 81 58.0
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 4.9e-16 90.5 124 38.7
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 9.3e-15 86.3 61 65.6
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 7.9e-14 83.2 66 57.6
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 1.3e-13 82.4 57 63.2
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 3.3e-12 77.8 88 50.0
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.8e-11 74.7 72 54.2
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.8e-10 72.0 79 57.0
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 5.8e-09 67.0 65 56.9
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 5.5e-07 60.5 79 48.1
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 3.5e-06 57.8 43 60.5


User provided reference genes

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