Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.9e-47 192.2 99 100.0
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.9e-32 141.7 87 74.7
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.9e-32 141.7 87 74.7
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 8.6e-32 140.2 87 73.6
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 8.6e-32 140.2 87 73.6
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.5e-31 139.4 87 74.7
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.3e-31 138.3 87 72.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.6e-31 137.5 87 73.6
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 5.6e-31 137.5 87 73.6
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.2e-30 136.3 87 71.3
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 2.1e-30 135.6 87 70.1
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.1e-30 135.6 85 75.3
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 2.8e-30 135.2 87 70.1
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 2.8e-30 135.2 87 69.0
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.8e-30 135.2 87 70.1
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 4.7e-30 134.4 87 69.0
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 6.1e-30 134.0 100 63.0
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.0e-29 133.3 87 66.7
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 1.4e-29 132.9 87 69.0
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 1.8e-29 132.5 87 70.1
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.8e-29 132.5 87 67.8
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.8e-29 132.5 87 71.3
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 2.3e-29 132.1 87 70.1
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 2.3e-29 132.1 87 65.5
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 3.0e-29 131.7 87 67.8
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 3.0e-29 131.7 87 67.8
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 3.0e-29 131.7 87 67.8
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 3.0e-29 131.7 87 71.3
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 4.0e-29 131.3 87 66.7
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 4.0e-29 131.3 92 70.7
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 6.8e-29 130.6 87 67.8
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 6.8e-29 130.6 87 70.1
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 8.9e-29 130.2 86 68.6
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 8.9e-29 130.2 87 65.5
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.2e-28 129.8 87 67.8
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.2e-28 129.8 87 66.7
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.2e-28 129.8 87 66.7
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 1.2e-28 129.8 87 66.7
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.2e-28 129.8 87 67.8
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.2e-28 129.8 87 65.5
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.2e-28 129.8 87 65.5
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.5e-28 129.4 87 67.8
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.5e-28 129.4 87 67.8
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.5e-28 129.4 86 69.8
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.6e-28 128.6 86 68.6
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 3.4e-28 128.3 86 65.1
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.4e-28 128.3 87 64.4
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.4e-28 128.3 85 70.6
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 3.4e-28 128.3 87 66.7
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 4.4e-28 127.9 87 64.4
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 4.4e-28 127.9 84 71.4
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 5.7e-28 127.5 85 70.6
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 7.5e-28 127.1 80 73.8
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 7.5e-28 127.1 87 69.0
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 7.5e-28 127.1 87 65.5
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 7.5e-28 127.1 86 68.6
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 9.8e-28 126.7 87 64.4
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 9.8e-28 126.7 87 67.8
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 9.8e-28 126.7 86 66.3
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 1.3e-27 126.3 85 69.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.3e-27 126.3 87 65.5
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 1.3e-27 126.3 85 69.4
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.3e-27 126.3 86 66.3
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 1.7e-27 125.9 87 65.5
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.2e-27 125.6 87 66.7
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.9e-27 125.2 87 69.0
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 2.9e-27 125.2 84 70.2
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.7e-27 124.8 87 64.4
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.7e-27 124.8 87 64.4
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.9e-27 124.4 87 63.2
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 4.9e-27 124.4 87 63.2
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 6.4e-27 124.0 86 69.8
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 8.3e-27 123.6 87 64.4
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 8.3e-27 123.6 87 63.2
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 8.3e-27 123.6 87 65.5
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.1e-26 123.2 87 62.1
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 1.1e-26 123.2 86 65.1
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.4e-26 122.9 87 64.4
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 1.4e-26 122.9 86 65.1
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.4e-26 122.9 87 64.4
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 1.8e-26 122.5 87 65.5
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.8e-26 122.5 87 64.4
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.4e-26 122.1 83 66.3
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 3.2e-26 121.7 87 66.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 5.4e-26 120.9 87 63.2
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 5.4e-26 120.9 86 62.8
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 5.4e-26 120.9 86 62.8
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 5.4e-26 120.9 86 62.8
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 7.0e-26 120.6 87 62.1
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.2e-25 119.8 87 62.1
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.2e-25 119.8 87 62.1
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 2.0e-25 119.0 87 59.8
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 2.0e-25 119.0 75 72.0
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 2.7e-25 118.6 86 64.0
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 3.5e-25 118.2 87 63.2
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 7.8e-25 117.1 86 61.6
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 7.8e-25 117.1 86 61.6
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 7.8e-25 117.1 76 69.7
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 7.8e-25 117.1 86 64.0
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 1.5e-23 112.8 92 60.9
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 4.3e-23 111.3 98 54.1
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 2.1e-22 109.0 79 63.3
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.8e-21 105.9 87 57.5
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.0e-20 102.4 114 48.2
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.4e-20 101.7 80 60.0
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 1.7e-19 99.4 74 60.8
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 3.7e-19 98.2 85 52.9
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 6.4e-19 97.4 84 59.5
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 1.1e-18 96.7 67 65.7
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 7.0e-18 94.0 58 77.6
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 3.5e-17 91.7 80 55.0
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 6.0e-17 90.9 60 76.7
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 1.0e-16 90.1 58 74.1
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 3.9e-16 88.2 81 54.3
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.2e-14 83.2 87 51.7
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.2e-14 83.2 76 56.6
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.1e-13 80.1 56 60.7
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.4e-12 75.1 58 65.5
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 3.4e-12 75.1 60 68.3
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 6.6e-08 60.8 102 38.2
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 3.3e-07 58.5 37 73.0
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 5.6e-07 57.8 70 51.4
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 9.5e-07 57.0 87 36.8
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.6e-06 56.2 57 56.1
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.6e-06 56.2 57 56.1


User provided reference genes

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