Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 0.0e+00 1219.9 622 100.0
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 0.0e+00 1179.9 620 96.1
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 0.0e+00 1132.1 622 92.6
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 0.0e+00 1129.4 622 92.3
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 0.0e+00 1120.1 623 92.0
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 0.0e+00 1096.6 622 88.9
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 0.0e+00 1094.0 622 88.7
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 0.0e+00 1094.0 622 88.9
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 0.0e+00 1092.8 622 88.6
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 2.9e-303 1044.6 622 86.2
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 8.5e-303 1043.1 624 85.9
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 6.8e-284 980.3 621 80.5
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.8e-261 905.2 629 71.1
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 1.6e-256 889.4 626 70.4
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 2.3e-255 885.6 637 70.2
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 5.0e-255 884.4 630 70.0
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 4.7e-253 877.9 630 69.5
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 2.3e-252 875.5 630 69.0
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 2.6e-251 872.1 628 70.4
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 1.1e-249 866.7 630 67.5
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 2.4e-249 865.5 627 68.1
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 6.0e-248 860.9 663 65.6
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 3.9e-247 858.2 627 67.9
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 4.3e-246 854.7 630 67.0
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 1.4e-244 849.7 629 66.8
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 1.2e-243 846.7 626 66.6
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.5e-243 846.3 630 67.0
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 1.5e-243 846.3 625 66.4
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 3.4e-243 845.1 625 66.6
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 5.8e-243 844.3 626 67.7
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 7.6e-243 844.0 629 67.1
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 1.3e-242 843.2 628 67.0
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 1.3e-242 843.2 629 66.3
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 2.9e-242 842.0 630 66.8
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 3.8e-242 841.6 626 67.6
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 4.9e-242 841.3 630 67.0
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 6.4e-242 840.9 629 66.3
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 3.2e-241 838.6 627 65.6
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 3.5e-240 835.1 628 66.4
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 7.8e-240 833.9 628 66.9
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 2.3e-239 832.4 631 65.1
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 3.9e-239 831.6 629 66.1
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 5.1e-239 831.2 604 68.4
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 6.6e-239 830.9 629 66.1
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 1.9e-238 829.3 635 65.0
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 9.6e-238 827.0 630 66.2
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 9.6e-238 827.0 625 66.4
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 2.1e-237 825.9 626 65.0
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 2.8e-237 825.5 632 64.4
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 4.7e-237 824.7 630 66.0
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 8.1e-237 823.9 628 64.6
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 1.4e-236 823.2 720 60.0
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 1.1e-233 813.5 629 63.8
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 1.4e-233 813.1 608 66.4
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 1.9e-230 802.7 630 65.2
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 1.9e-230 802.7 630 64.1
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 5.6e-230 801.2 630 63.8
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 8.1e-229 797.3 627 64.0
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 2.0e-227 792.7 587 67.3
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 7.6e-227 790.8 627 63.5
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 1.9e-222 776.2 630 62.7
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 3.1e-220 768.8 639 62.0
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 3.4e-219 765.4 632 60.8
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.4e-217 760.0 641 61.8
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.9e-217 759.6 625 61.9
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 3.2e-217 758.8 629 62.2
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 2.1e-213 746.1 631 59.6
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 3.1e-212 742.3 636 61.2
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 6.9e-212 741.1 495 72.3
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 2.0e-211 739.6 624 61.1
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 1.0e-207 727.2 642 60.0
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 4.1e-204 715.3 641 58.5
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 2.2e-197 693.0 609 59.3
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 4.8e-197 691.8 741 52.9
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 2.0e-195 686.4 588 60.5
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 7.4e-190 667.9 630 58.3
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 8.2e-189 664.5 629 55.8
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 4.7e-184 648.7 587 57.6
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 3.7e-181 639.0 622 60.1
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.5e-177 626.3 642 53.4
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 1.5e-174 617.1 625 55.4
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 1.4e-167 594.0 653 53.1
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 2.3e-167 593.2 627 49.4
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 7.7e-163 578.2 404 69.1
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 1.8e-151 540.4 567 49.4
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.0e-151 539.7 566 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 1.2e-147 527.7 638 46.1
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 4.3e-145 519.2 437 59.5
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 2.2e-133 480.3 631 42.2
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 1.6e-131 474.2 547 49.2
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 1.6e-131 474.2 626 42.0
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 5.8e-126 455.7 441 54.6
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 5.6e-113 412.5 362 58.8
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 6.2e-112 409.1 273 74.0
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 3.1e-111 406.8 309 68.0
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.3e-106 391.3 285 66.0
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 5.6e-105 386.0 288 67.0
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 1.1e-97 361.7 295 63.4
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.3e-85 321.6 272 57.7
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.0e-82 310.5 245 62.9
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 1.7e-77 294.7 245 62.4
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 3.0e-74 283.9 230 64.8
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 2.1e-67 261.2 225 61.3
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 2.8e-64 250.8 242 55.4
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 7.5e-57 226.1 705 28.8
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 5.3e-55 219.9 158 66.5
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 1.6e-46 191.8 600 28.5
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.5e-44 184.5 167 62.3
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 3.6e-43 180.6 161 58.4
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 2.3e-42 177.9 183 53.6
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 2.3e-42 177.9 189 54.0
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.2e-33 149.1 134 61.9
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 3.7e-32 144.1 132 56.1
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 9.5e-28 129.4 104 60.6
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 2.3e-26 124.8 102 59.8
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 5.8e-25 120.2 83 75.9
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 4.1e-23 114.0 118 50.0
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 4.1e-23 114.0 66 83.3
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 2.7e-22 111.3 129 45.7
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 6.2e-19 100.1 73 56.2
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 1.5e-17 95.5 296 29.4
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 1.3e-13 82.4 55 67.3
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.3e-13 82.4 65 64.6
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 2.3e-13 81.6 66 60.6
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 4.7e-11 73.9 66 53.0
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.8e-10 72.0 52 63.5
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 2.1e-06 58.5 117 39.3


User provided reference genes

Program Settings