Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 8.0e-127 457.2 250 100.0
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 5.7e-125 451.1 250 95.2
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.0e-118 430.3 252 91.3
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 8.9e-118 427.2 261 91.6
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 3.2e-115 418.7 251 88.4
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 9.2e-115 417.2 265 86.4
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.6e-114 416.4 251 87.3
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 3.5e-114 415.2 251 86.9
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 3.5e-114 415.2 251 86.9
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 4.6e-114 414.8 251 87.3
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 3.3e-112 408.7 253 89.7
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 4.3e-112 408.3 251 89.2
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 5.6e-112 407.9 252 88.5
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 1.2e-109 400.2 252 84.9
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 1.5e-109 399.8 251 85.3
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.4e-109 398.3 253 83.0
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 5.8e-109 397.9 256 86.7
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-108 396.7 251 83.7
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 1.3e-108 396.7 251 83.7
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 6.4e-108 394.4 251 82.9
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 6.4e-108 394.4 251 82.9
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 2.6e-101 372.5 242 80.2
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.4e-101 371.7 247 78.9
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.4e-101 371.7 247 78.9
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.4e-101 371.7 247 78.9
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 2.2e-100 369.4 243 81.5
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.7e-100 368.6 242 79.8
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.9e-100 368.2 242 79.8
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.4e-99 366.7 247 79.4
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.2e-99 365.5 242 79.3
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.0e-97 360.5 246 77.2
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.3e-97 360.1 240 79.6
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 1.7e-97 359.8 237 79.3
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 3.9e-97 358.6 242 78.5
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 6.6e-97 357.8 250 76.0
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 8.6e-97 357.5 237 78.9
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 1.1e-96 357.1 249 75.1
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.9e-96 356.3 241 78.4
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 2.5e-96 355.9 242 77.3
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 3.3e-96 355.5 237 78.1
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 1.6e-95 353.2 242 76.9
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.6e-95 353.2 242 76.9
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.1e-95 352.8 241 78.4
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 2.1e-95 352.8 246 75.6
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 2.1e-95 352.8 239 78.2
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 2.8e-95 352.4 243 76.1
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 2.8e-95 352.4 240 77.5
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 3.6e-95 352.1 239 78.2
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 1.1e-94 350.5 243 77.4
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.1e-94 350.5 243 77.4
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.4e-94 350.1 243 77.4
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.4e-94 350.1 235 77.9
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 2.3e-94 349.4 246 75.6
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 3.1e-94 349.0 251 73.3
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 4.0e-94 348.6 239 77.0
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 6.8e-94 347.8 243 77.0
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 8.9e-94 347.4 254 73.2
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 8.9e-94 347.4 259 71.8
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 1.2e-93 347.1 239 77.0
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.2e-93 347.1 240 76.2
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.5e-93 346.7 259 73.4
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 4.4e-93 345.1 239 77.4
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 5.8e-93 344.7 247 78.1
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 1.7e-92 343.2 252 72.6
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 4.9e-92 341.7 239 78.2
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 4.9e-92 341.7 239 75.7
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 8.4e-92 340.9 239 75.3
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 1.4e-91 340.1 236 76.7
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.9e-91 339.7 239 77.8
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 3.2e-91 339.0 257 70.8
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.2e-91 339.0 239 77.8
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 3.2e-91 339.0 254 71.7
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 3.2e-91 339.0 255 72.5
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 4.1e-91 338.6 249 72.7
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 9.2e-91 337.4 250 72.8
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.6e-90 336.7 254 72.0
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 2.1e-90 336.3 251 77.3
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 2.1e-90 336.3 247 72.9
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 2.1e-90 336.3 254 70.9
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 2.1e-90 336.3 254 71.3
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 3.5e-90 335.5 249 71.5
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.6e-90 335.1 256 71.1
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.0e-89 334.0 239 74.9
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 1.7e-89 333.2 243 72.8
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 3.0e-89 332.4 246 73.2
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 3.0e-89 332.4 254 68.9
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 3.9e-89 332.0 251 71.7
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.6e-88 328.2 253 71.1
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 7.3e-88 327.8 254 69.3
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.2e-87 327.0 239 73.2
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.6e-87 326.6 254 70.5
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 2.1e-87 326.2 242 72.3
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 2.8e-87 325.9 277 66.1
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 4.7e-87 325.1 246 70.3
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 2.4e-86 322.8 239 70.7
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.4e-86 322.8 239 71.1
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.5e-85 320.1 250 69.6
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 3.4e-85 318.9 279 64.9
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 5.8e-85 318.2 256 66.8
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 2.9e-84 315.8 241 68.9
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 3.8e-84 315.5 239 70.3
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.2e-82 310.5 235 74.9
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.0e-81 307.4 249 69.9
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.9e-75 286.6 217 72.8
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.2e-74 283.9 224 68.8
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 6.0e-74 281.6 210 73.8
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.1e-71 273.1 238 64.7
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 2.4e-70 269.6 241 59.8
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 7.6e-69 264.6 153 86.9
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.2e-68 263.1 252 57.9
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 4.2e-67 258.8 210 67.1
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 7.1e-67 258.1 280 56.1
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.8e-65 253.4 153 82.4
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.8e-63 246.1 247 55.9
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 3.7e-63 245.7 258 53.5
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.5e-59 233.0 239 58.2
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.1e-56 224.2 154 76.0
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 4.8e-55 218.8 158 67.1
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 6.9e-54 214.9 125 87.2
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 2.6e-53 213.0 253 49.8
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 6.5e-52 208.4 178 65.7
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.2e-51 205.7 153 72.5
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.7e-47 192.6 154 69.5
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 2.4e-46 189.9 153 63.4
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.9e-44 183.0 154 66.2
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.5e-43 179.9 154 65.6
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 3.6e-42 176.0 172 62.2
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 9.7e-40 167.9 142 66.9
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 1.7e-39 167.2 231 46.8
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.5e-36 155.2 105 75.2
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 4.1e-30 136.0 67 95.5
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 6.3e-23 112.1 241 36.1
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 1.8e-22 110.5 73 72.6
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.2e-18 97.8 101 57.4
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.2e-13 81.3 100 52.0
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.6e-13 80.9 94 52.1
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 2.9e-12 76.6 42 83.3
BcaC07g41861 Brassica carinata HOM05D005498 ORTHO05D006719 5.5e-11 72.4 49 81.6
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 9.5e-11 71.6 92 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.2e-08 64.7 172 33.1
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 2.0e-08 63.9 71 54.9


User provided reference genes

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