Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 4.4e-178 627.9 323 100.0
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.1e-173 613.2 323 97.5
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 2.1e-172 609.0 325 96.9
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.5e-167 591.7 325 93.8
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-164 582.8 325 92.0
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.8e-163 579.3 324 91.7
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.5e-162 576.2 324 91.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.0e-162 575.9 323 91.3
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 5.8e-162 574.3 324 90.1
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 4.9e-161 571.2 324 90.1
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 3.0e-150 535.4 323 83.0
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 5.6e-149 531.2 325 82.5
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.8e-148 528.9 335 80.9
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.8e-132 475.7 323 74.6
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.1e-131 471.9 323 74.6
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.9e-131 471.1 323 74.3
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.9e-129 465.7 323 73.7
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.0e-129 464.9 323 72.8
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 8.5e-129 464.2 323 72.1
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.7e-127 459.1 323 72.8
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 3.6e-127 458.8 332 72.6
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.8e-126 456.4 320 72.5
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 6.7e-126 454.5 327 68.8
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 7.4e-125 451.1 327 69.7
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.3e-124 450.3 328 68.9
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 3.7e-124 448.7 325 76.0
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.1e-123 447.2 327 68.5
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 6.9e-123 444.5 327 68.2
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 6.9e-123 444.5 345 66.7
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.2e-122 443.7 329 66.6
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.4e-122 442.2 327 67.6
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 3.4e-122 442.2 327 68.2
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 5.9e-122 441.4 322 68.9
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 7.7e-122 441.0 328 67.7
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.7e-121 439.9 321 67.9
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.8e-121 438.7 322 67.4
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 5.0e-121 438.3 325 67.7
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 8.5e-121 437.6 320 73.4
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 8.5e-121 437.6 322 68.0
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.1e-120 437.2 330 68.8
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 2.5e-120 436.0 321 67.9
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 3.2e-120 435.6 329 67.5
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 3.2e-120 435.6 328 66.2
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 3.2e-120 435.6 330 68.5
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 4.2e-120 435.3 324 68.5
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 7.2e-120 434.5 327 67.0
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 9.4e-120 434.1 329 66.0
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.2e-119 433.7 320 67.2
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.1e-119 433.0 327 66.7
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.7e-119 432.6 325 73.2
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 3.6e-119 432.2 320 67.2
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 4.6e-119 431.8 325 68.3
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 4.6e-119 431.8 325 67.7
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 4.6e-119 431.8 321 67.3
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 6.1e-119 431.4 322 68.0
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 7.9e-119 431.0 330 68.5
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 7.9e-119 431.0 325 66.5
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.0e-118 430.6 329 65.7
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.0e-118 430.6 327 65.7
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.4e-118 430.3 326 67.8
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.8e-118 429.9 327 66.7
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 2.3e-118 429.5 327 66.4
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 6.7e-118 427.9 329 65.0
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.5e-117 426.8 330 67.9
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.5e-117 426.8 322 66.5
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.6e-117 426.0 327 65.7
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 3.3e-117 425.6 327 66.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.7e-117 424.9 330 67.6
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 5.7e-117 424.9 327 66.4
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.4e-117 424.5 322 66.1
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 9.7e-117 424.1 327 65.7
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 9.7e-117 424.1 357 61.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.2e-116 422.9 330 67.3
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.2e-116 422.9 330 67.3
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.2e-116 422.9 327 66.1
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 6.3e-116 421.4 293 71.3
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 8.2e-116 421.0 323 68.4
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 8.2e-116 421.0 362 60.8
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.1e-115 420.6 327 64.8
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 5.9e-114 414.8 328 63.7
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 7.7e-114 414.5 354 61.6
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 7.7e-114 414.5 326 65.3
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.7e-114 414.5 326 65.0
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.0e-113 414.1 325 65.2
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-113 413.7 325 65.2
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.3e-113 413.7 327 64.2
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.3e-113 413.7 325 65.2
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.2e-113 412.9 325 65.5
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.5e-113 411.4 319 71.8
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.1e-112 410.6 323 66.3
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.1e-112 410.6 322 64.6
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 2.5e-112 409.5 328 62.8
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.2e-112 409.1 327 63.9
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 5.5e-112 408.3 320 63.8
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 3.6e-111 405.6 324 63.9
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.7e-111 405.2 319 62.4
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 6.1e-111 404.8 276 72.8
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 3.0e-110 402.5 326 63.2
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 3.9e-110 402.1 321 63.2
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.7e-108 396.7 331 61.3
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 2.8e-108 396.0 320 63.4
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 9.1e-107 391.0 326 60.4
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 9.1e-107 391.0 398 54.8
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 8.0e-103 377.9 326 59.5
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 5.2e-102 375.2 326 59.5
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 3.7e-100 369.0 271 67.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.1e-99 365.5 326 57.7
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.6e-98 363.6 320 59.1
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.0e-97 360.9 327 57.5
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.7e-97 360.1 323 55.1
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 2.8e-92 342.8 324 56.2
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 2.4e-91 339.7 320 56.6
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 8.6e-89 331.3 325 59.4
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 4.1e-83 312.4 178 88.2
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.5e-80 303.1 320 49.7
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 7.3e-80 301.6 325 52.6
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.8e-78 297.0 313 49.2
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 5.7e-77 292.0 320 50.9
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.2e-76 290.0 276 57.6
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 9.5e-72 274.6 177 78.0
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 2.0e-66 256.9 279 47.3
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 2.5e-64 250.0 193 63.7
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.5e-61 240.7 262 52.7
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 5.8e-61 238.8 320 45.0
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 6.4e-60 235.3 192 60.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 4.1e-59 232.6 310 43.2
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.1e-55 220.3 198 58.1
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 3.1e-54 216.5 188 61.2
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-50 203.8 142 67.6
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 3.0e-49 199.9 131 71.8
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 9.6e-48 194.9 140 68.6
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.2e-47 194.5 133 69.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 6.2e-47 192.2 157 60.5
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 9.0e-46 188.3 155 64.5
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.0e-45 187.2 131 68.7
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 8.4e-44 181.8 135 62.2
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.3e-41 174.5 263 39.5
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 5.6e-40 169.1 258 38.4
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-39 167.5 215 46.5
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.1e-39 167.2 289 36.3
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 3.1e-38 163.3 146 54.1
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 6.9e-38 162.2 128 63.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-36 157.9 174 47.1
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.4e-35 153.7 93 88.2
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.4e-35 153.7 93 88.2
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.6e-34 151.0 93 87.1
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 2.3e-33 147.1 196 39.8
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.3e-32 142.9 140 50.7
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 7.4e-32 142.1 117 71.8
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 6.9e-30 135.6 114 58.8
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.2e-29 134.8 99 67.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.5e-29 134.4 137 50.4
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 5.8e-29 132.5 126 51.6
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.9e-27 127.5 195 39.0
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 2.4e-27 127.1 80 70.0
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.5e-24 117.1 117 51.3
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.4e-21 106.7 68 73.5
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.9e-19 100.9 61 90.2
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 2.7e-18 97.1 60 83.3
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 2.7e-18 97.1 189 36.5
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.2e-12 77.4 60 65.0
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 1.9e-11 74.3 45 82.2


User provided reference genes

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